Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2565

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2563 and GFF2564 are separated by 207 nucleotidesGFF2564 and GFF2565 overlap by 4 nucleotidesGFF2565 and GFF2566 are separated by 21 nucleotides GFF2563 - hypothetical protein, at 152,010 to 152,600 GFF2563 GFF2564 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 152,808 to 153,347 GFF2564 GFF2565 - hypothetical protein, at 153,344 to 153,472 GFF2565 GFF2566 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 153,494 to 157,093 GFF2566 Position (kb) 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 152.387 kb on - strand, within GFF2563at 152.645 kb on + strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.707 kb on + strandat 152.707 kb on + strandat 152.708 kb on - strandat 152.708 kb on - strandat 152.746 kb on - strandat 152.770 kb on - strandat 152.803 kb on + strandat 152.803 kb on + strandat 152.803 kb on + strandat 152.804 kb on - strandat 152.804 kb on - strandat 152.804 kb on - strandat 152.831 kb on + strandat 152.831 kb on + strandat 152.842 kb on - strandat 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.014 kb on - strand, within GFF2564at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.426 kb on - strand, within GFF2565at 153.557 kb on + strandat 153.558 kb on - strandat 153.558 kb on - strandat 153.678 kb on - strandat 153.701 kb on + strandat 153.701 kb on + strandat 153.701 kb on + strandat 153.702 kb on - strandat 153.702 kb on - strandat 153.731 kb on + strandat 153.732 kb on - strandat 153.866 kb on + strand, within GFF2566at 153.866 kb on + strand, within GFF2566at 153.867 kb on - strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.281 kb on - strand, within GFF2566at 154.289 kb on + strand, within GFF2566at 154.289 kb on + strand, within GFF2566at 154.290 kb on - strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.306 kb on - strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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152,387 - GFF2563 0.64 -0.1
152,645 + -0.6
152,646 - +0.5
152,646 - -0.8
152,646 - -0.6
152,646 - +0.2
152,707 + -0.3
152,707 + -0.2
152,708 - +0.3
152,708 - +0.7
152,746 - +0.2
152,770 - -0.4
152,803 + +0.1
152,803 + +2.4
152,803 + +1.4
152,804 - +0.6
152,804 - -0.5
152,804 - +0.9
152,831 + +0.7
152,831 + +0.2
152,842 - +1.4
153,013 + GFF2564 0.38 +0.9
153,013 + GFF2564 0.38 +0.6
153,013 + GFF2564 0.38 -0.1
153,013 + GFF2564 0.38 +0.5
153,014 - GFF2564 0.38 +0.9
153,394 + GFF2565 0.39 -0.6
153,394 + GFF2565 0.39 -0.9
153,394 + GFF2565 0.39 -0.5
153,394 + GFF2565 0.39 +0.0
153,394 + GFF2565 0.39 +0.6
153,394 + GFF2565 0.39 +0.6
153,394 + GFF2565 0.39 +0.6
153,394 + GFF2565 0.39 +0.5
153,394 + GFF2565 0.39 -0.3
153,394 + GFF2565 0.39 +0.9
153,394 + GFF2565 0.39 +0.9
153,394 + GFF2565 0.39 -0.1
153,394 + GFF2565 0.39 -0.2
153,394 + GFF2565 0.39 +0.9
153,394 + GFF2565 0.39 -0.1
153,394 + GFF2565 0.39 -2.8
153,395 - GFF2565 0.40 +1.3
153,395 - GFF2565 0.40 +0.1
153,395 - GFF2565 0.40 +0.4
153,395 - GFF2565 0.40 +0.4
153,395 - GFF2565 0.40 +0.5
153,395 - GFF2565 0.40 +0.6
153,395 - GFF2565 0.40 -0.1
153,395 - GFF2565 0.40 +0.4
153,426 - GFF2565 0.64 +0.3
153,557 + +0.1
153,558 - -0.3
153,558 - +0.6
153,678 - +1.2
153,701 + +0.1
153,701 + +0.2
153,701 + +0.4
153,702 - +0.6
153,702 - -2.1
153,731 + +0.4
153,732 - +0.3
153,866 + GFF2566 0.10 -1.6
153,866 + GFF2566 0.10 +0.3
153,867 - GFF2566 0.10 +0.5
154,280 + GFF2566 0.22 +0.2
154,280 + GFF2566 0.22 +0.2
154,280 + GFF2566 0.22 +1.4
154,280 + GFF2566 0.22 -0.5
154,280 + GFF2566 0.22 -0.1
154,281 - GFF2566 0.22 +0.1
154,289 + GFF2566 0.22 +0.4
154,289 + GFF2566 0.22 +0.0
154,290 - GFF2566 0.22 +0.0
154,304 + GFF2566 0.23 +0.4
154,304 + GFF2566 0.23 -0.3
154,304 + GFF2566 0.23 +0.4
154,304 + GFF2566 0.23 -0.4
154,304 + GFF2566 0.23 +0.1
154,304 + GFF2566 0.23 +0.7
154,304 + GFF2566 0.23 -0.4
154,305 - GFF2566 0.23 +0.8
154,305 - GFF2566 0.23 +0.4
154,305 - GFF2566 0.23 -0.1
154,305 - GFF2566 0.23 +0.9
154,306 - GFF2566 0.23 -1.1
154,385 + GFF2566 0.25 -1.2
154,385 + GFF2566 0.25 -0.1
154,385 + GFF2566 0.25 +0.5
154,385 + GFF2566 0.25 +0.4
154,385 + GFF2566 0.25 +0.3
154,385 + GFF2566 0.25 +0.2
154,386 - GFF2566 0.25 +0.1
154,386 - GFF2566 0.25 +0.5
154,386 - GFF2566 0.25 -0.8
154,386 - GFF2566 0.25 -1.8
154,386 - GFF2566 0.25 -1.2

Or see this region's nucleotide sequence