Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2469 and GFF2470 are separated by 226 nucleotides GFF2470 and GFF2471 are separated by 205 nucleotides GFF2471 and GFF2472 are separated by 257 nucleotides
GFF2469 - NADP-dependent malic enzyme (EC 1.1.1.40), at 51,831 to 54,158
GFF2469
GFF2470 - hypothetical protein, at 54,385 to 54,546
GFF2470
GFF2471 - Bacterioferritin, at 54,752 to 55,228
GFF2471
GFF2472 - TonB-dependent hemin , ferrichrome receptor, at 55,486 to 57,672
GFF2472
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.413 kb on + strand, within GFF2469 at 53.413 kb on + strand, within GFF2469 at 53.413 kb on + strand, within GFF2469 at 53.414 kb on - strand, within GFF2469 at 53.414 kb on - strand, within GFF2469 at 53.414 kb on - strand, within GFF2469 at 53.456 kb on - strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.953 kb on + strand at 53.953 kb on + strand at 53.953 kb on + strand at 53.953 kb on + strand at 53.953 kb on + strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.959 kb on + strand at 53.959 kb on + strand at 53.960 kb on - strand at 53.960 kb on - strand at 53.960 kb on - strand at 54.021 kb on + strand at 54.022 kb on - strand at 54.097 kb on + strand at 54.098 kb on - strand at 54.182 kb on - strand at 54.211 kb on + strand at 54.213 kb on + strand at 54.213 kb on + strand at 54.213 kb on + strand at 54.214 kb on - strand at 54.214 kb on - strand at 54.236 kb on + strand at 54.236 kb on + strand at 54.236 kb on + strand at 54.253 kb on + strand at 54.253 kb on + strand at 54.253 kb on + strand at 54.254 kb on - strand at 54.316 kb on + strand at 54.317 kb on - strand at 54.317 kb on - strand at 54.317 kb on - strand at 54.317 kb on - strand at 54.665 kb on + strand at 54.676 kb on - strand at 54.783 kb on + strand at 54.783 kb on + strand at 54.783 kb on + strand at 54.784 kb on - strand at 54.784 kb on - strand at 54.784 kb on - strand at 54.784 kb on - strand at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.889 kb on - strand, within GFF2471 at 55.095 kb on + strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.143 kb on + strand, within GFF2471 at 55.144 kb on - strand, within GFF2471 at 55.155 kb on + strand, within GFF2471 at 55.155 kb on + strand, within GFF2471 at 55.283 kb on + strand at 55.283 kb on + strand at 55.284 kb on - strand at 55.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 53,413 + GFF2469 0.68 +0.7 53,413 + GFF2469 0.68 -0.1 53,413 + GFF2469 0.68 -0.2 53,414 - GFF2469 0.68 +0.1 53,414 - GFF2469 0.68 -0.9 53,414 - GFF2469 0.68 -0.1 53,456 - GFF2469 0.70 +0.1 53,698 + GFF2469 0.80 +0.6 53,698 + GFF2469 0.80 -1.2 53,698 + GFF2469 0.80 -0.5 53,698 + GFF2469 0.80 -0.1 53,699 - GFF2469 0.80 -0.6 53,699 - GFF2469 0.80 -1.1 53,699 - GFF2469 0.80 -2.5 53,699 - GFF2469 0.80 -0.1 53,953 + -0.9 53,953 + +1.5 53,953 + -0.1 53,953 + -0.5 53,953 + +0.0 53,954 - -0.3 53,954 - -0.7 53,954 - +0.9 53,954 - -0.2 53,954 - +0.9 53,954 - -0.1 53,954 - +0.2 53,954 - -1.1 53,954 - -0.2 53,959 + +0.3 53,959 + +0.3 53,960 - -0.3 53,960 - +0.4 53,960 - -0.1 54,021 + -0.2 54,022 - +0.9 54,097 + -0.5 54,098 - -0.1 54,182 - +0.1 54,211 + +0.3 54,213 + -1.1 54,213 + -0.6 54,213 + -1.2 54,214 - +0.4 54,214 - -0.1 54,236 + -0.8 54,236 + +0.1 54,236 + -0.1 54,253 + +0.5 54,253 + -0.5 54,253 + -0.2 54,254 - -0.1 54,316 + +2.3 54,317 - +0.4 54,317 - -0.5 54,317 - +2.5 54,317 - +0.9 54,665 + +0.6 54,676 - +1.2 54,783 + -0.6 54,783 + -0.5 54,783 + -0.1 54,784 - -0.1 54,784 - +0.1 54,784 - +0.0 54,784 - -0.9 54,888 + GFF2471 0.29 -1.1 54,888 + GFF2471 0.29 -0.2 54,888 + GFF2471 0.29 +0.2 54,888 + GFF2471 0.29 -0.9 54,888 + GFF2471 0.29 -0.6 54,888 + GFF2471 0.29 -0.3 54,889 - GFF2471 0.29 -0.1 55,095 + GFF2471 0.72 -0.3 55,096 - GFF2471 0.72 +0.4 55,096 - GFF2471 0.72 -0.1 55,096 - GFF2471 0.72 -0.9 55,096 - GFF2471 0.72 -0.6 55,143 + GFF2471 0.82 -0.0 55,144 - GFF2471 0.82 -1.1 55,155 + GFF2471 0.84 -0.2 55,155 + GFF2471 0.84 +0.5 55,283 + -0.5 55,283 + -0.6 55,284 - +0.1 55,394 - -0.2
Or see this region's nucleotide sequence