Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2429

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
7,226	-		GFF2427	0.67	+0.4
7,240	+		GFF2427	0.68	+0.4
7,240	+		GFF2427	0.68	-0.3
7,240	+		GFF2427	0.68	+0.7
7,240	+		GFF2427	0.68	-0.1
7,240	+		GFF2427	0.68	-0.5
7,240	+		GFF2427	0.68	-0.3
7,240	+		GFF2427	0.68	+0.7
7,241	-		GFF2427	0.69	+0.9
7,241	-		GFF2427	0.69	+1.1
7,241	-		GFF2427	0.69	-0.3
7,241	-		GFF2427	0.69	-0.1
7,264	+		GFF2427	0.71	-1.6
7,264	+		GFF2427	0.71	+0.1
7,264	+		GFF2427	0.71	+0.1
7,264	+		GFF2427	0.71	-0.6
7,264	+		GFF2427	0.71	-0.3
7,264	+		GFF2427	0.71	+0.6
7,264	+		GFF2427	0.71	-0.6
7,264	+		GFF2427	0.71	+0.1
7,265	-		GFF2427	0.71	-1.2
7,265	-		GFF2427	0.71	-0.1
7,265	-		GFF2427	0.71	-0.0
7,265	-		GFF2427	0.71	+0.9
7,265	-		GFF2427	0.71	-0.6
7,265	-		GFF2427	0.71	+0.1
7,265	-		GFF2427	0.71	+0.6
7,498	+				+1.1
7,498	+				+0.4
7,498	+				-0.3
7,499	-				+0.6
7,565	-				-0.4
7,565	-				+0.6
7,605	+				+0.1
7,965	+		GFF2428	0.66	+0.3
7,965	+		GFF2428	0.66	+0.9
7,965	+		GFF2428	0.66	-0.6
7,965	+		GFF2428	0.66	-0.2
8,153	+				-0.1
8,154	-				-0.2
8,154	-				-0.1
8,197	+				+0.5
8,198	-				-0.1
8,222	+				+0.5
8,223	-				-1.1
8,344	+		GFF2429	0.14	-0.6
8,345	-		GFF2429	0.15	+0.2
8,345	-		GFF2429	0.15	-0.5
8,441	+		GFF2429	0.22	-1.6
8,442	-		GFF2429	0.22	-0.1
8,442	-		GFF2429	0.22	-0.1
8,526	+		GFF2429	0.29	+0.1
8,526	+		GFF2429	0.29	-2.4
8,526	+		GFF2429	0.29	+0.5
8,526	+		GFF2429	0.29	-1.6
8,526	+		GFF2429	0.29	-0.1
8,527	-		GFF2429	0.29	+0.1
8,527	-		GFF2429	0.29	+0.3
8,527	-		GFF2429	0.29	+0.6
8,527	-		GFF2429	0.29	+0.1
8,527	-		GFF2429	0.29	-0.2
8,530	+		GFF2429	0.29	-1.8
8,530	+		GFF2429	0.29	-0.2
8,530	+		GFF2429	0.29	+0.4
8,530	+		GFF2429	0.29	-0.5
8,530	+		GFF2429	0.29	+1.5
8,530	+		GFF2429	0.29	+0.1
8,530	+		GFF2429	0.29	+0.3
8,530	+		GFF2429	0.29	-0.3
8,531	-		GFF2429	0.29	-1.8
8,531	-		GFF2429	0.29	-2.2
8,531	-		GFF2429	0.29	-0.1
8,531	-		GFF2429	0.29	-0.5
8,531	-		GFF2429	0.29	+0.0
8,531	-		GFF2429	0.29	+1.2
8,531	-		GFF2429	0.29	+0.1
8,531	-		GFF2429	0.29	+0.6
8,531	-		GFF2429	0.29	+0.6
8,531	-		GFF2429	0.29	-0.7
8,531	-		GFF2429	0.29	+0.4
8,531	-		GFF2429	0.29	-0.6
8,531	-		GFF2429	0.29	-1.4
8,531	-		GFF2429	0.29	-0.6
8,531	-		GFF2429	0.29	-0.4
8,531	-		GFF2429	0.29	+0.0
8,531	-		GFF2429	0.29	-0.5
8,531	-		GFF2429	0.29	-0.4
8,808	+		GFF2429	0.51	+1.7
8,897	+		GFF2429	0.58	+0.9
8,897	+		GFF2429	0.58	+0.7
8,897	+		GFF2429	0.58	+2.5
8,897	+		GFF2429	0.58	+0.0
8,898	-		GFF2429	0.58	+0.3
8,898	-		GFF2429	0.58	-0.2
8,898	-		GFF2429	0.58	+0.9
8,898	-		GFF2429	0.58	-0.6
8,898	-		GFF2429	0.58	-0.1
8,925	-		GFF2429	0.60	-0.1
9,052	+		GFF2429	0.70	-0.4
9,053	-		GFF2429	0.70	-0.6
9,053	-		GFF2429	0.70	-0.1
9,053	-		GFF2429	0.70	+0.0
9,053	-		GFF2429	0.70	-0.1
9,097	-		GFF2429	0.73	-0.6
9,097	-		GFF2429	0.73	-0.1
9,127	+		GFF2429	0.76	-0.2
9,128	-		GFF2429	0.76	-0.1
9,224	+		GFF2429	0.83	+0.1
9,224	+		GFF2429	0.83	+0.2
9,225	-		GFF2429	0.83	-0.6
9,225	-		GFF2429	0.83	-0.5
9,225	-		GFF2429	0.83	+0.1
9,225	-		GFF2429	0.83	+0.0
9,225	-		GFF2429	0.83	-0.8
9,250	+		GFF2429	0.85	+0.8
9,250	+		GFF2429	0.85	+0.8
9,250	+		GFF2429	0.85	+0.0
9,250	+		GFF2429	0.85	-0.3
9,251	-		GFF2429	0.85	+0.4
9,251	-		GFF2429	0.85	-0.4
9,251	-		GFF2429	0.85	-0.7
9,251	-		GFF2429	0.85	+0.4
9,467	+				+1.1
9,467	+				-0.1
9,467	+				+0.8
9,467	+				-1.1
9,468	-				-2.1
9,468	-				-0.1
9,581	+				+0.4
9,581	+				+0.3
9,581	+				+0.0
9,581	+				-0.1
9,581	+				+0.3
9,581	+				+0.0
9,581	+				+0.5
9,581	+				-0.3
9,582	-				+0.4
9,582	-				+0.7
9,582	-				-0.0
9,582	-				-0.2
9,582	-				+0.0
9,582	-				-0.1
9,582	-				-0.5
9,582	-				-0.5
9,582	-				-0.1
9,608	-				-0.2
9,608	-				-0.9
9,626	+				-0.3
9,626	+				-0.3
9,626	+				-0.8
9,626	+				-0.1
9,626	+				+0.6
9,626	+				-0.1
9,626	+				-0.2
9,626	+				+1.8
9,627	-				+0.2
9,627	-				-1.2
9,627	-				-0.1
9,627	-				-0.1
9,627	-				+1.2
9,627	-				+0.6
9,627	-				+0.2
9,627	-				-0.5
9,659	+				-0.2
9,692	-				-0.5
9,692	-				-0.0
9,692	-				-0.7
9,738	+				-0.1
9,738	+				-0.6
9,738	+				+0.2
9,738	+				+0.0
9,738	+				+0.1
9,738	+				-0.1
9,738	+				+0.5
9,739	-				-1.5
9,739	-				-0.7
9,739	-				+0.1
9,739	-				-0.3
9,762	+				+0.2
9,762	+				-1.2
9,762	+				-0.4
9,763	-				-0.2
9,763	-				-0.1
9,763	-				+1.5
9,830	+				+0.4
9,831	-				-0.1
9,831	-				-0.4
9,848	+				-0.1
9,848	+				-0.2
9,848	+				-0.2
9,848	+				-0.6
9,848	+				-0.2
9,848	+				-0.8
9,848	+				+0.3
9,848	+				+0.4
9,848	+				+0.6
9,848	+				+0.4
9,848	+				-0.6
9,848	+				+0.6
9,849	-				+0.2
9,849	-				+0.7
9,849	-				+0.9
9,849	-				+0.1
9,849	-				-2.0
9,849	-				+0.3
9,849	-				-1.8
9,849	-				-0.3
9,849	-				-0.5
9,849	-				-0.6
9,888	+				-0.2
9,889	-				+0.1
9,889	-				-0.4
9,889	-				-0.4
9,889	-				+0.1
9,889	-				-0.2
9,902	-				-1.1