Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2398 and GFF2399 are separated by 18 nucleotides GFF2399 and GFF2400 are separated by 107 nucleotides
GFF2398 - putative exported protein, at 43,282 to 44,274
GFF2398
GFF2399 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 44,293 to 45,474
GFF2399
GFF2400 - Chromosome initiation inhibitor, at 45,582 to 46,505
GFF2400
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1 at 43.557 kb on - strand, within GFF2398 at 43.634 kb on + strand, within GFF2398 at 43.635 kb on - strand, within GFF2398 at 43.772 kb on + strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.799 kb on + strand, within GFF2398 at 43.799 kb on + strand, within GFF2398 at 43.800 kb on - strand, within GFF2398 at 44.010 kb on - strand, within GFF2398 at 44.010 kb on - strand, within GFF2398 at 44.384 kb on + strand at 44.447 kb on + strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.633 kb on + strand, within GFF2399 at 44.633 kb on + strand, within GFF2399 at 45.091 kb on + strand, within GFF2399 at 45.342 kb on - strand, within GFF2399 at 45.513 kb on + strand at 45.513 kb on + strand at 45.514 kb on - strand at 45.514 kb on - strand at 45.529 kb on + strand at 46.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 43,557 - GFF2398 0.28 -0.6 43,634 + GFF2398 0.35 -1.4 43,635 - GFF2398 0.36 -0.3 43,772 + GFF2398 0.49 +0.6 43,773 - GFF2398 0.49 -0.3 43,773 - GFF2398 0.49 -0.3 43,773 - GFF2398 0.49 -0.3 43,773 - GFF2398 0.49 -0.7 43,773 - GFF2398 0.49 +0.2 43,799 + GFF2398 0.52 +0.4 43,799 + GFF2398 0.52 +0.0 43,800 - GFF2398 0.52 +0.1 44,010 - GFF2398 0.73 -0.3 44,010 - GFF2398 0.73 +0.5 44,384 + +0.1 44,447 + GFF2399 0.13 -0.4 44,448 - GFF2399 0.13 +0.5 44,448 - GFF2399 0.13 +0.6 44,448 - GFF2399 0.13 +1.0 44,448 - GFF2399 0.13 +0.1 44,448 - GFF2399 0.13 +0.7 44,633 + GFF2399 0.29 +0.9 44,633 + GFF2399 0.29 +0.1 45,091 + GFF2399 0.68 -0.6 45,342 - GFF2399 0.89 +0.7 45,513 + -0.1 45,513 + +0.1 45,514 - +0.9 45,514 - +0.2 45,529 + -0.1 46,445 - -1.4
Or see this region's nucleotide sequence