Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2394 and GFF2395 are separated by 324 nucleotides GFF2395 and GFF2396 overlap by 4 nucleotides
GFF2394 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 37,791 to 39,617
GFF2394
GFF2395 - FOG: GGDEF domain, at 39,942 to 40,445
GFF2395
GFF2396 - hypothetical protein, at 40,442 to 40,852
GFF2396
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1 at 39.126 kb on + strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.167 kb on - strand, within GFF2394 at 39.170 kb on + strand, within GFF2394 at 39.171 kb on - strand, within GFF2394 at 39.236 kb on + strand, within GFF2394 at 39.236 kb on + strand, within GFF2394 at 39.237 kb on - strand, within GFF2394 at 39.267 kb on + strand, within GFF2394 at 39.267 kb on + strand, within GFF2394 at 39.268 kb on - strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.285 kb on - strand, within GFF2394 at 39.285 kb on - strand, within GFF2394 at 39.285 kb on - strand, within GFF2394 at 39.311 kb on - strand, within GFF2394 at 39.389 kb on + strand, within GFF2394 at 39.390 kb on - strand, within GFF2394 at 39.390 kb on - strand, within GFF2394 at 39.390 kb on - strand, within GFF2394 at 39.459 kb on + strand at 39.621 kb on + strand at 39.621 kb on + strand at 39.622 kb on - strand at 39.635 kb on - strand at 39.720 kb on + strand at 39.721 kb on - strand at 39.822 kb on + strand at 39.864 kb on + strand at 39.915 kb on - strand at 40.270 kb on - strand, within GFF2395 at 40.270 kb on - strand, within GFF2395 at 40.270 kb on - strand, within GFF2395 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.531 kb on - strand, within GFF2396 at 40.531 kb on - strand, within GFF2396 at 40.675 kb on + strand, within GFF2396 at 40.676 kb on - strand, within GFF2396 at 40.676 kb on - strand, within GFF2396 at 40.797 kb on + strand, within GFF2396 at 40.797 kb on + strand, within GFF2396 at 41.038 kb on + strand at 41.039 kb on - strand at 41.039 kb on - strand at 41.039 kb on - strand at 41.046 kb on + strand at 41.047 kb on - strand at 41.047 kb on - strand at 41.090 kb on + strand at 41.090 kb on + strand at 41.090 kb on + strand at 41.091 kb on - strand at 41.348 kb on - strand at 41.355 kb on + strand at 41.355 kb on + strand at 41.356 kb on - strand at 41.381 kb on + strand at 41.382 kb on - strand at 41.439 kb on + strand at 41.440 kb on - strand at 41.440 kb on - strand at 41.440 kb on - strand at 41.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 39,126 + GFF2394 0.73 -0.9 39,126 + GFF2394 0.73 -1.5 39,126 + GFF2394 0.73 +0.9 39,126 + GFF2394 0.73 -0.6 39,127 - GFF2394 0.73 +0.1 39,127 - GFF2394 0.73 +0.9 39,127 - GFF2394 0.73 +0.3 39,127 - GFF2394 0.73 -0.7 39,166 + GFF2394 0.75 -0.8 39,166 + GFF2394 0.75 +0.8 39,166 + GFF2394 0.75 +0.9 39,166 + GFF2394 0.75 -0.5 39,167 - GFF2394 0.75 -0.2 39,170 + GFF2394 0.75 +0.4 39,171 - GFF2394 0.76 -1.6 39,236 + GFF2394 0.79 +0.6 39,236 + GFF2394 0.79 -0.1 39,237 - GFF2394 0.79 +1.4 39,267 + GFF2394 0.81 -0.7 39,267 + GFF2394 0.81 -0.1 39,268 - GFF2394 0.81 +0.5 39,284 + GFF2394 0.82 +0.4 39,284 + GFF2394 0.82 -0.5 39,284 + GFF2394 0.82 +0.7 39,284 + GFF2394 0.82 +0.7 39,284 + GFF2394 0.82 -0.4 39,285 - GFF2394 0.82 -0.5 39,285 - GFF2394 0.82 +0.1 39,285 - GFF2394 0.82 -0.1 39,311 - GFF2394 0.83 -0.7 39,389 + GFF2394 0.87 +0.0 39,390 - GFF2394 0.88 +0.3 39,390 - GFF2394 0.88 +0.7 39,390 - GFF2394 0.88 +0.1 39,459 + +0.2 39,621 + -0.2 39,621 + +0.5 39,622 - +0.1 39,635 - -0.2 39,720 + -0.6 39,721 - +0.5 39,822 + +0.8 39,864 + +0.5 39,915 - -0.0 40,270 - GFF2395 0.65 +0.0 40,270 - GFF2395 0.65 +0.8 40,270 - GFF2395 0.65 -0.0 40,530 + GFF2396 0.21 -1.1 40,530 + GFF2396 0.21 +0.2 40,530 + GFF2396 0.21 -0.3 40,530 + GFF2396 0.21 +0.3 40,531 - GFF2396 0.22 +0.4 40,531 - GFF2396 0.22 +0.1 40,675 + GFF2396 0.57 +0.9 40,676 - GFF2396 0.57 -0.0 40,676 - GFF2396 0.57 -0.7 40,797 + GFF2396 0.86 +0.4 40,797 + GFF2396 0.86 +0.4 41,038 + -0.3 41,039 - -0.1 41,039 - +0.3 41,039 - -0.3 41,046 + -1.4 41,047 - -0.2 41,047 - +0.4 41,090 + +0.7 41,090 + -0.2 41,090 + -0.4 41,091 - +0.8 41,348 - -0.4 41,355 + -0.9 41,355 + +0.4 41,356 - +0.5 41,381 + +0.5 41,382 - -0.4 41,439 + -0.0 41,440 - -0.3 41,440 - -0.2 41,440 - +0.3 41,440 - -0.2
Or see this region's nucleotide sequence