Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2270

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,153,691	+		GFF2268	0.87	+0.2
1,153,691	+		GFF2268	0.87	+0.1
1,153,697	+		GFF2268	0.87	+0.0
1,153,697	+		GFF2268	0.87	-0.6
1,153,697	+		GFF2268	0.87	+0.5
1,153,697	+		GFF2268	0.87	-0.5
1,153,697	+		GFF2268	0.87	+0.0
1,153,698	-		GFF2268	0.87	-0.2
1,153,698	-		GFF2268	0.87	+0.1
1,153,698	-		GFF2268	0.87	-1.9
1,153,698	-		GFF2268	0.87	+0.4
1,153,698	-		GFF2268	0.87	+0.4
1,153,698	-		GFF2268	0.87	+1.2
1,153,698	-		GFF2268	0.87	-0.3
1,153,698	-		GFF2268	0.87	+0.1
1,153,698	-		GFF2268	0.87	+0.7
1,153,698	-		GFF2268	0.87	+0.2
1,153,698	-		GFF2268	0.87	-0.2
1,153,698	-		GFF2268	0.87	-0.8
1,153,698	-		GFF2268	0.87	+1.5
1,153,698	-		GFF2268	0.87	+0.2
1,153,698	-		GFF2268	0.87	+0.2
1,153,698	-		GFF2268	0.87	+0.0
1,153,698	-		GFF2268	0.87	-0.0
1,153,718	+		GFF2268	0.89	-0.5
1,153,718	+		GFF2268	0.89	-0.6
1,153,718	+		GFF2268	0.89	+0.1
1,153,718	+		GFF2268	0.89	-0.4
1,153,719	-		GFF2268	0.89	+0.1
1,153,719	-		GFF2268	0.89	-0.4
1,153,719	-		GFF2268	0.89	-0.2
1,153,719	-		GFF2268	0.89	-0.8
1,153,852	+				-0.8
1,153,852	+				-1.0
1,153,852	+				-0.8
1,153,852	+				-0.5
1,153,853	-				+0.2
1,153,853	-				-0.7
1,153,853	-				-0.5
1,153,853	-				-0.1
1,153,854	+				-0.1
1,153,854	+				+2.6
1,153,855	-				-0.2
1,153,876	-				+0.4
1,153,876	-				-0.4
1,153,885	+				-0.6
1,153,886	-				+0.2
1,153,891	+				-0.4
1,153,891	+				-0.3
1,153,892	-				+0.5
1,153,894	+				-0.0
1,153,894	+				-1.0
1,153,894	+				-1.2
1,153,894	+				-0.3
1,153,895	-				+0.4
1,153,895	-				-0.0
1,153,895	-				+0.7
1,153,895	-				-0.2
1,153,895	-				+0.8
1,153,905	+				+0.8
1,153,905	+				-0.0
1,153,906	-				-0.2
1,153,906	-				-0.1
1,153,972	+				+0.3
1,153,972	+				+0.2
1,153,973	-				-0.2
1,153,973	-				-0.1
1,153,973	-				+1.5
1,153,975	+				-0.2
1,154,002	+		GFF2269	0.11	-0.3
1,154,003	-		GFF2269	0.11	+1.3
1,154,003	-		GFF2269	0.11	-0.6
1,154,003	-		GFF2269	0.11	+0.7
1,154,038	+		GFF2269	0.16	-0.6
1,154,038	+		GFF2269	0.16	-0.2
1,154,329	+		GFF2269	0.55	-0.2
1,154,330	-		GFF2269	0.55	+0.1
1,154,330	-		GFF2269	0.55	+0.1
1,154,464	+		GFF2269	0.73	-0.7
1,154,464	+		GFF2269	0.73	-0.6
1,154,464	+		GFF2269	0.73	-0.1
1,154,464	+		GFF2269	0.73	+0.3
1,154,464	+		GFF2269	0.73	+1.4
1,154,465	-		GFF2269	0.73	-0.4
1,154,465	-		GFF2269	0.73	+0.7
1,154,465	-		GFF2269	0.73	-0.8
1,154,465	-		GFF2269	0.73	-0.2
1,154,465	-		GFF2269	0.73	+0.2
1,154,465	-		GFF2269	0.73	-0.0
1,154,465	-		GFF2269	0.73	+1.6
1,154,465	-		GFF2269	0.73	-0.3
1,154,465	-		GFF2269	0.73	-0.0
1,154,536	+		GFF2269	0.82	-0.3
1,154,536	+		GFF2269	0.82	-0.3
1,154,536	+		GFF2269	0.82	-1.3
1,154,537	-		GFF2269	0.82	+0.6
1,154,537	-		GFF2269	0.82	+0.1
1,154,537	-		GFF2269	0.82	+0.8
1,154,537	-		GFF2269	0.82	+0.1
1,154,537	-		GFF2269	0.82	-0.9
1,154,539	+		GFF2269	0.82	+0.4
1,154,539	+		GFF2269	0.82	+0.3
1,154,540	-		GFF2269	0.83	+0.2
1,154,540	-		GFF2269	0.83	-0.7
1,154,540	-		GFF2269	0.83	+0.6
1,154,650	+				+0.4
1,154,650	+				+0.7
1,154,650	+				+0.3
1,154,651	-				+1.1
1,154,761	+				+0.1
1,154,761	+				-0.4
1,154,761	+				+0.2
1,154,761	+				-0.1
1,154,761	+				-0.8
1,154,762	-				-0.9
1,154,762	-				+0.0
1,154,762	-				+0.1
1,154,794	+				-0.3
1,154,794	+				+0.6
1,154,794	+				+0.8
1,154,794	+				-1.1
1,154,794	+				+0.7
1,154,794	+				-0.1
1,154,794	+				-0.2
1,154,794	+				+0.1
1,154,794	+				+0.4
1,154,794	+				+0.1
1,154,794	+				-0.1
1,154,794	+				-0.0
1,154,794	+				+1.0
1,154,795	-				+0.6
1,154,795	-				+2.0
1,154,795	-				-0.4
1,154,795	-				-0.4
1,154,795	-				+1.0
1,154,795	-				-1.4
1,154,795	-				-0.3
1,154,795	-				-0.0
1,154,795	-				-1.0
1,154,797	+				-1.0
1,154,797	+				+0.5
1,154,797	+				+0.2
1,154,797	+				-0.6
1,154,797	+				-0.1
1,154,797	+				+0.4
1,154,798	-				-0.1
1,154,798	-				+0.7
1,154,798	-				+1.2
1,154,798	-				+0.4
1,154,798	-				+0.2
1,154,798	-				-0.7
1,154,798	-				-0.0
1,154,798	-				-0.2
1,154,813	+				-0.2
1,154,830	+		GFF2270	0.11	+0.6
1,154,830	+		GFF2270	0.11	+0.1
1,154,831	-		GFF2270	0.11	-0.6
1,154,944	+		GFF2270	0.20	+0.4
1,154,944	+		GFF2270	0.20	-0.2
1,154,944	+		GFF2270	0.20	-0.2
1,154,944	+		GFF2270	0.20	+0.2
1,154,945	-		GFF2270	0.20	-0.9
1,154,945	-		GFF2270	0.20	-1.0
1,154,945	-		GFF2270	0.20	-0.5
1,154,960	-		GFF2270	0.21	-0.1
1,154,960	-		GFF2270	0.21	+0.4
1,154,960	-		GFF2270	0.21	+0.1
1,154,992	+		GFF2270	0.23	-0.1
1,154,993	-		GFF2270	0.23	+0.1
1,155,140	-		GFF2270	0.35	-1.0
1,155,169	+		GFF2270	0.37	+0.8
1,155,268	+		GFF2270	0.44	+0.2
1,155,268	+		GFF2270	0.44	+1.0
1,155,302	-		GFF2270	0.47	-0.2
1,155,302	-		GFF2270	0.47	-0.4
1,155,302	-		GFF2270	0.47	-0.5
1,155,304	+		GFF2270	0.47	+0.6
1,155,304	+		GFF2270	0.47	-0.3
1,155,304	+		GFF2270	0.47	-0.5
1,155,305	-		GFF2270	0.47	-0.3
1,155,305	-		GFF2270	0.47	+0.2
1,155,305	-		GFF2270	0.47	+0.3
1,155,305	-		GFF2270	0.47	-0.2
1,155,305	-		GFF2270	0.47	+0.4
1,155,305	-		GFF2270	0.47	-1.6
1,155,305	-		GFF2270	0.47	-0.8
1,155,745	+		GFF2270	0.80	+0.1
1,155,745	+		GFF2270	0.80	-1.3
1,155,745	+		GFF2270	0.80	-0.1
1,155,745	+		GFF2270	0.80	-0.8
1,155,745	+		GFF2270	0.80	-0.0
1,155,745	+		GFF2270	0.80	-0.2
1,155,745	-		GFF2270	0.80	-0.6
1,155,746	-		GFF2270	0.80	-0.4
1,155,746	-		GFF2270	0.80	+0.0
1,155,746	-		GFF2270	0.80	+0.4
1,155,746	-		GFF2270	0.80	-0.1
1,155,746	-		GFF2270	0.80	+0.2
1,155,746	-		GFF2270	0.80	+0.2
1,155,746	-		GFF2270	0.80	+1.2
1,155,746	-		GFF2270	0.80	-0.4
1,155,754	+		GFF2270	0.81	-1.5
1,155,755	-		GFF2270	0.81	+1.3
1,155,755	-		GFF2270	0.81	-0.6
1,155,978	+				-0.6
1,155,978	+				-0.3
1,155,978	+				+0.1
1,155,978	+				-0.2
1,155,978	+				+0.2
1,155,979	-				+0.7
1,155,979	-				-0.8
1,155,979	-				-0.3
1,155,979	-				+0.6
1,155,979	-				+1.0
1,155,979	-				+0.8
1,155,979	-				-1.1
1,155,979	-				-0.2
1,156,050	+				-0.5
1,156,050	+				+0.3
1,156,051	-				+1.4
1,156,105	+				+0.0
1,156,105	+				+0.1
1,156,105	+				-0.6
1,156,105	+				-0.1
1,156,105	+				+0.6
1,156,105	+				+0.4
1,156,105	+				+0.7
1,156,105	+				-0.5
1,156,106	-				+0.9
1,156,106	-				-0.1
1,156,106	-				-0.3
1,156,106	-				+0.1
1,156,106	-				+0.1
1,156,106	-				+2.6
1,156,106	-				+0.4
1,156,106	-				-0.0
1,156,109	+				+1.6
1,156,109	+				+0.3
1,156,110	-				-0.9
1,156,110	-				-0.1
1,156,110	-				+0.2
1,156,110	-				-0.1
1,156,174	+				-0.1
1,156,174	+				-0.0
1,156,174	+				+0.2
1,156,174	+				-1.1
1,156,174	+				-0.9
1,156,174	+				+0.2
1,156,175	-				-0.4
1,156,175	-				+1.0
1,156,175	-				+0.2
1,156,175	-				-0.5
1,156,175	-				+0.0
1,156,175	-				-0.6
1,156,175	-				-0.1
1,156,175	-				-1.0
1,156,175	-				+1.0
1,156,175	-				-0.1
1,156,175	-				+0.9
1,156,175	-				-0.1
1,156,175	-				+1.3
1,156,175	-				-0.2
1,156,178	+				-0.2
1,156,178	+				+0.7
1,156,178	+				-0.5
1,156,178	+				-0.0
1,156,178	+				-0.8
1,156,178	+				+0.2
1,156,178	+				+0.1
1,156,178	+				-0.7
1,156,178	+				-0.0
1,156,179	-				-0.1
1,156,179	-				-0.0
1,156,179	-				+0.1
1,156,179	-				-0.1
1,156,179	-				-0.1
1,156,179	-				-0.4
1,156,219	-				+0.4
1,156,288	+				-0.2
1,156,288	+				-0.4
1,156,288	+				+0.5
1,156,288	+				+1.0
1,156,288	+				+0.2
1,156,288	+				+1.6
1,156,288	+				-0.1
1,156,288	+				+0.4
1,156,288	+				+1.9
1,156,288	+				-0.0
1,156,288	+				+0.9
1,156,288	+				+0.6
1,156,288	+				+0.7
1,156,288	+				-0.4
1,156,288	+				+0.1
1,156,289	-				+0.5
1,156,289	-				-0.1
1,156,289	-				-0.4
1,156,289	-				-0.9
1,156,289	-				-0.1
1,156,289	-				-0.2
1,156,289	-				+0.0
1,156,289	-				-0.0
1,156,289	-				+0.9
1,156,289	-				+0.1
1,156,289	-				-0.6
1,156,289	-				-0.6
1,156,289	-				-0.3
1,156,289	-				+0.2
1,156,289	-				-0.6
1,156,289	-				-0.2
1,156,289	-				-0.2
1,156,294	+				+0.1
1,156,317	+				+1.4
1,156,317	+				+0.1
1,156,318	-				+0.0
1,156,342	+				+0.3
1,156,342	+				+0.1
1,156,342	+				+1.0
1,156,343	-				+0.3
1,156,343	-				-0.2
1,156,343	-				-0.4
1,156,343	-				+0.8
1,156,352	+				-1.0
1,156,352	+				-0.3
1,156,353	-				-1.3
1,156,353	-				+1.2
1,156,353	-				-0.5
1,156,353	-				-0.1
1,156,353	-				-0.1
1,156,543	+				+0.3
1,156,543	+				-1.5
1,156,543	+				+0.3
1,156,544	-				-0.2
1,156,550	+				+0.1
1,156,550	+				-0.0
1,156,550	+				+0.1
1,156,550	+				+0.2
1,156,550	+				-0.3
1,156,550	+				-0.0
1,156,551	-				-0.4
1,156,551	-				-0.3
1,156,551	-				+0.8
1,156,551	-				+0.3
1,156,551	-				+0.4
1,156,551	-				-0.5
1,156,551	-				-0.0
1,156,551	-				-0.2
1,156,551	-				-0.2