Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2217 and GFF2218 are separated by 26 nucleotides GFF2218 and GFF2219 overlap by 8 nucleotides GFF2219 and GFF2220 overlap by 4 nucleotides GFF2220 and GFF2221 overlap by 4 nucleotides GFF2221 and GFF2222 overlap by 4 nucleotides
GFF2217 - [NiFe] hydrogenase nickel incorporation-associated protein HypB, at 1,106,550 to 1,107,410
GFF2217
GFF2218 - [NiFe] hydrogenase nickel incorporation protein HypA, at 1,107,437 to 1,107,784
GFF2218
GFF2219 - Hydrogenase maturation factor HoxV/HupK, at 1,107,777 to 1,108,931
GFF2219
GFF2220 - Hydrogenase maturation factor HoxT/HybE, at 1,108,928 to 1,109,389
GFF2220
GFF2221 - Hydrogenase maturation factor HoxR, at 1,109,386 to 1,109,613
GFF2221
GFF2222 - Hydrogenase maturation factor HoxQ, at 1,109,610 to 1,110,488
GFF2222
Position (kb) 1107
1108
1109 Strain fitness (log2 ratio) -1
0
1 at 1107.399 kb on + strand at 1107.400 kb on - strand at 1109.355 kb on + strand at 1109.355 kb on + strand at 1109.510 kb on + strand, within GFF2221 at 1109.510 kb on + strand, within GFF2221 at 1109.577 kb on - strand, within GFF2221 at 1109.577 kb on - strand, within GFF2221 at 1109.577 kb on - strand, within GFF2221 at 1109.746 kb on + strand, within GFF2222 at 1109.746 kb on + strand, within GFF2222 at 1109.746 kb on + strand, within GFF2222 at 1109.747 kb on - strand, within GFF2222 at 1109.747 kb on - strand, within GFF2222 at 1109.750 kb on - strand, within GFF2222 at 1109.750 kb on - strand, within GFF2222 at 1109.750 kb on - strand, within GFF2222
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 1,107,399 + -0.6 1,107,400 - +0.6 1,109,355 + -0.1 1,109,355 + +0.5 1,109,510 + GFF2221 0.54 +0.2 1,109,510 + GFF2221 0.54 -1.1 1,109,577 - GFF2221 0.84 +0.4 1,109,577 - GFF2221 0.84 -0.4 1,109,577 - GFF2221 0.84 +0.2 1,109,746 + GFF2222 0.15 -0.8 1,109,746 + GFF2222 0.15 -0.2 1,109,746 + GFF2222 0.15 +0.1 1,109,747 - GFF2222 0.16 +0.1 1,109,747 - GFF2222 0.16 -0.5 1,109,750 - GFF2222 0.16 +0.0 1,109,750 - GFF2222 0.16 +0.4 1,109,750 - GFF2222 0.16 -1.0
Or see this region's nucleotide sequence