Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2079

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2077 and GFF2078 overlap by 4 nucleotidesGFF2078 and GFF2079 are separated by 63 nucleotidesGFF2079 and GFF2080 are separated by 39 nucleotides GFF2077 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 963,249 to 965,489 GFF2077 GFF2078 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 965,486 to 965,950 GFF2078 GFF2079 - Nucleoside-diphosphate-sugar epimerases, at 966,014 to 966,946 GFF2079 GFF2080 - FIG00956879: hypothetical protein, at 966,986 to 967,963 GFF2080 Position (kb) 966 967Strain fitness (log2 ratio) -2 -1 0 1 2 3at 965.179 kb on + strand, within GFF2077at 965.179 kb on + strand, within GFF2077at 965.180 kb on + strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.182 kb on + strand, within GFF2077at 965.182 kb on + strand, within GFF2077at 965.407 kb on + strandat 965.407 kb on + strandat 965.407 kb on + strandat 965.407 kb on + strandat 965.407 kb on + strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.547 kb on + strand, within GFF2078at 965.548 kb on - strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.848 kb on - strand, within GFF2078at 965.848 kb on - strand, within GFF2078at 965.942 kb on + strandat 965.943 kb on - strandat 965.943 kb on - strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 966.015 kb on + strandat 966.016 kb on - strandat 966.247 kb on + strand, within GFF2079at 966.248 kb on - strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.265 kb on - strand, within GFF2079at 966.265 kb on - strand, within GFF2079at 966.265 kb on - strand, within GFF2079at 966.309 kb on + strand, within GFF2079at 966.310 kb on - strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.533 kb on + strand, within GFF2079at 966.533 kb on + strand, within GFF2079at 966.534 kb on - strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.753 kb on + strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.816 kb on - strand, within GFF2079at 966.879 kb on + strandat 966.880 kb on - strandat 966.946 kb on + strandat 966.946 kb on + strandat 966.946 kb on + strandat 966.946 kb on + strandat 966.947 kb on - strandat 966.947 kb on - strandat 967.005 kb on + strandat 967.005 kb on + strandat 967.006 kb on - strandat 967.006 kb on - strandat 967.006 kb on - strandat 967.032 kb on + strandat 967.032 kb on + strandat 967.032 kb on + strandat 967.032 kb on + strandat 967.032 kb on + strandat 967.032 kb on + strandat 967.033 kb on - strandat 967.033 kb on - strandat 967.033 kb on - strandat 967.033 kb on - strandat 967.038 kb on + strandat 967.038 kb on + strandat 967.039 kb on - strandat 967.074 kb on + strandat 967.074 kb on + strandat 967.074 kb on + strandat 967.075 kb on - strandat 967.161 kb on + strand, within GFF2080at 967.198 kb on + strand, within GFF2080at 967.198 kb on + strand, within GFF2080at 967.204 kb on + strand, within GFF2080at 967.204 kb on + strand, within GFF2080at 967.205 kb on - strand, within GFF2080at 967.359 kb on + strand, within GFF2080at 967.359 kb on + strand, within GFF2080at 967.359 kb on + strand, within GFF2080at 967.360 kb on - strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.413 kb on - strand, within GFF2080at 967.413 kb on - strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.417 kb on - strand, within GFF2080at 967.417 kb on - strand, within GFF2080at 967.417 kb on - strand, within GFF2080at 967.518 kb on + strand, within GFF2080at 967.518 kb on + strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.536 kb on + strand, within GFF2080at 967.537 kb on - strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.546 kb on + strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.701 kb on + strand, within GFF2080at 967.818 kb on + strand, within GFF2080at 967.819 kb on - strand, within GFF2080

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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965,179 + GFF2077 0.86 +0.7
965,179 + GFF2077 0.86 -0.3
965,180 + GFF2077 0.86 -0.1
965,180 - GFF2077 0.86 +0.3
965,180 - GFF2077 0.86 +0.2
965,180 - GFF2077 0.86 +1.7
965,180 - GFF2077 0.86 -0.4
965,180 - GFF2077 0.86 -0.2
965,182 + GFF2077 0.86 +0.4
965,182 + GFF2077 0.86 -0.9
965,407 + +0.9
965,407 + +0.0
965,407 + +0.6
965,407 + +2.3
965,407 + -0.3
965,408 - +0.7
965,408 - +0.1
965,408 - -0.5
965,408 - -0.2
965,408 - -1.3
965,547 + GFF2078 0.13 +1.0
965,548 - GFF2078 0.13 +0.1
965,847 + GFF2078 0.78 +0.0
965,847 + GFF2078 0.78 -1.0
965,847 + GFF2078 0.78 -0.1
965,847 + GFF2078 0.78 +0.3
965,848 - GFF2078 0.78 -0.1
965,848 - GFF2078 0.78 +0.2
965,942 + +0.0
965,943 - -0.3
965,943 - -0.2
965,968 + +0.3
965,968 + -0.3
965,968 + +0.0
965,968 + -0.4
965,968 + -0.6
965,968 + -0.7
965,968 + +0.3
965,968 + -0.4
965,969 - -0.4
965,969 - +1.1
965,969 - -0.6
965,969 - -0.2
965,969 - +0.0
965,969 - -0.3
965,969 - +0.7
965,969 - -0.1
966,015 + +1.6
966,016 - -0.2
966,247 + GFF2079 0.25 -0.2
966,248 - GFF2079 0.25 +0.3
966,264 + GFF2079 0.27 -0.1
966,264 + GFF2079 0.27 +0.2
966,264 + GFF2079 0.27 +0.1
966,264 + GFF2079 0.27 +0.5
966,265 - GFF2079 0.27 +0.2
966,265 - GFF2079 0.27 -0.3
966,265 - GFF2079 0.27 +0.3
966,309 + GFF2079 0.32 +0.0
966,310 - GFF2079 0.32 -0.1
966,474 + GFF2079 0.49 -0.2
966,474 + GFF2079 0.49 +1.0
966,474 + GFF2079 0.49 -0.8
966,474 + GFF2079 0.49 +0.5
966,474 + GFF2079 0.49 +0.4
966,475 - GFF2079 0.49 +0.0
966,475 - GFF2079 0.49 -0.4
966,475 - GFF2079 0.49 -0.4
966,475 - GFF2079 0.49 -1.3
966,475 - GFF2079 0.49 -0.2
966,475 - GFF2079 0.49 -0.3
966,475 - GFF2079 0.49 -1.5
966,533 + GFF2079 0.56 -0.1
966,533 + GFF2079 0.56 +0.3
966,534 - GFF2079 0.56 -0.8
966,624 + GFF2079 0.65 -0.2
966,624 + GFF2079 0.65 +0.3
966,624 + GFF2079 0.65 +0.4
966,624 + GFF2079 0.65 +0.2
966,624 + GFF2079 0.65 +0.4
966,624 + GFF2079 0.65 +0.4
966,624 + GFF2079 0.65 +0.4
966,624 + GFF2079 0.65 -0.3
966,625 - GFF2079 0.65 -0.5
966,625 - GFF2079 0.65 +0.0
966,625 - GFF2079 0.65 +0.4
966,625 - GFF2079 0.65 +0.5
966,625 - GFF2079 0.65 +0.3
966,625 - GFF2079 0.65 -1.0
966,625 - GFF2079 0.65 -0.3
966,628 + GFF2079 0.66 +1.0
966,628 + GFF2079 0.66 +1.8
966,628 + GFF2079 0.66 +0.2
966,628 + GFF2079 0.66 -0.2
966,628 + GFF2079 0.66 +0.3
966,628 + GFF2079 0.66 -0.1
966,628 + GFF2079 0.66 -0.5
966,628 + GFF2079 0.66 +0.2
966,628 + GFF2079 0.66 +0.1
966,628 + GFF2079 0.66 +0.2
966,628 + GFF2079 0.66 +0.2
966,628 + GFF2079 0.66 -0.2
966,628 + GFF2079 0.66 -0.3
966,628 + GFF2079 0.66 -0.1
966,628 + GFF2079 0.66 +0.2
966,628 + GFF2079 0.66 -0.5
966,629 - GFF2079 0.66 +0.2
966,629 - GFF2079 0.66 -0.0
966,629 - GFF2079 0.66 +0.1
966,629 - GFF2079 0.66 -0.0
966,629 - GFF2079 0.66 -0.3
966,629 - GFF2079 0.66 +0.2
966,629 - GFF2079 0.66 +0.9
966,629 - GFF2079 0.66 -0.3
966,629 - GFF2079 0.66 +0.4
966,629 - GFF2079 0.66 +0.0
966,629 - GFF2079 0.66 -0.0
966,629 - GFF2079 0.66 +0.2
966,629 - GFF2079 0.66 +0.3
966,630 + GFF2079 0.66 -0.4
966,630 + GFF2079 0.66 -0.1
966,630 + GFF2079 0.66 -0.5
966,630 + GFF2079 0.66 -0.7
966,630 + GFF2079 0.66 +0.4
966,630 + GFF2079 0.66 +0.4
966,630 + GFF2079 0.66 +1.0
966,630 + GFF2079 0.66 -1.3
966,630 + GFF2079 0.66 +1.0
966,630 + GFF2079 0.66 -0.5
966,630 + GFF2079 0.66 -0.3
966,630 + GFF2079 0.66 +1.5
966,630 + GFF2079 0.66 +0.8
966,630 + GFF2079 0.66 +1.0
966,630 + GFF2079 0.66 -0.6
966,630 + GFF2079 0.66 -0.3
966,630 + GFF2079 0.66 +0.2
966,630 + GFF2079 0.66 +0.4
966,630 + GFF2079 0.66 -0.3
966,630 + GFF2079 0.66 -0.5
966,631 - GFF2079 0.66 +0.0
966,631 - GFF2079 0.66 +3.0
966,631 - GFF2079 0.66 +0.0
966,631 - GFF2079 0.66 -0.4
966,631 - GFF2079 0.66 +0.3
966,631 - GFF2079 0.66 -0.5
966,631 - GFF2079 0.66 -0.8
966,631 - GFF2079 0.66 -1.2
966,631 - GFF2079 0.66 +0.6
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 -0.3
966,631 - GFF2079 0.66 +0.3
966,631 - GFF2079 0.66 -2.0
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 +0.0
966,631 - GFF2079 0.66 +0.4
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 +0.0
966,631 - GFF2079 0.66 -0.1
966,631 - GFF2079 0.66 +0.8
966,631 - GFF2079 0.66 -0.9
966,631 - GFF2079 0.66 -0.4
966,631 - GFF2079 0.66 +0.3
966,631 - GFF2079 0.66 -0.4
966,631 - GFF2079 0.66 -1.1
966,631 - GFF2079 0.66 +0.1
966,753 + GFF2079 0.79 +0.5
966,754 - GFF2079 0.79 -0.2
966,754 - GFF2079 0.79 +0.3
966,754 - GFF2079 0.79 -0.3
966,754 - GFF2079 0.79 -0.8
966,816 - GFF2079 0.86 -0.3
966,879 + -0.1
966,880 - +0.3
966,946 + +0.3
966,946 + -0.1
966,946 + +0.0
966,946 + +0.4
966,947 - +0.0
966,947 - -0.1
967,005 + +0.0
967,005 + -0.7
967,006 - -0.7
967,006 - +0.1
967,006 - -0.4
967,032 + +0.3
967,032 + +0.4
967,032 + +0.4
967,032 + +0.2
967,032 + +0.4
967,032 + -0.2
967,033 - +0.4
967,033 - +0.3
967,033 - -0.4
967,033 - +0.1
967,038 + +0.1
967,038 + +0.3
967,039 - -0.6
967,074 + -0.0
967,074 + +1.7
967,074 + -0.2
967,075 - +0.4
967,161 + GFF2080 0.18 -0.5
967,198 + GFF2080 0.22 -1.0
967,198 + GFF2080 0.22 -0.6
967,204 + GFF2080 0.22 -0.6
967,204 + GFF2080 0.22 +0.2
967,205 - GFF2080 0.22 +0.5
967,359 + GFF2080 0.38 +0.1
967,359 + GFF2080 0.38 +0.7
967,359 + GFF2080 0.38 +0.7
967,360 - GFF2080 0.38 -0.6
967,412 + GFF2080 0.44 +0.0
967,412 + GFF2080 0.44 -0.6
967,412 + GFF2080 0.44 -0.4
967,412 + GFF2080 0.44 +0.4
967,412 + GFF2080 0.44 -1.2
967,412 + GFF2080 0.44 +0.3
967,413 - GFF2080 0.44 +0.4
967,413 - GFF2080 0.44 -0.5
967,416 + GFF2080 0.44 +0.7
967,416 + GFF2080 0.44 +0.1
967,416 + GFF2080 0.44 -0.4
967,416 + GFF2080 0.44 +0.0
967,416 + GFF2080 0.44 +0.3
967,416 + GFF2080 0.44 -0.8
967,416 + GFF2080 0.44 -0.3
967,417 - GFF2080 0.44 -2.2
967,417 - GFF2080 0.44 +0.2
967,417 - GFF2080 0.44 -0.5
967,518 + GFF2080 0.54 +0.0
967,518 + GFF2080 0.54 -0.3
967,519 - GFF2080 0.54 -0.4
967,519 - GFF2080 0.54 +0.2
967,519 - GFF2080 0.54 +0.1
967,519 - GFF2080 0.54 -0.1
967,536 + GFF2080 0.56 -0.3
967,537 - GFF2080 0.56 -0.0
967,542 + GFF2080 0.57 +0.7
967,542 + GFF2080 0.57 +0.0
967,542 + GFF2080 0.57 +1.6
967,542 + GFF2080 0.57 +0.2
967,542 + GFF2080 0.57 -2.5
967,542 + GFF2080 0.57 -0.3
967,546 + GFF2080 0.57 +0.0
967,547 - GFF2080 0.57 +1.0
967,547 - GFF2080 0.57 -0.7
967,547 - GFF2080 0.57 +0.2
967,547 - GFF2080 0.57 +1.1
967,548 + GFF2080 0.57 -0.4
967,548 + GFF2080 0.57 -0.5
967,548 + GFF2080 0.57 -0.4
967,548 + GFF2080 0.57 -0.2
967,549 - GFF2080 0.58 +0.0
967,549 - GFF2080 0.58 -0.7
967,549 - GFF2080 0.58 +0.0
967,549 - GFF2080 0.58 -0.1
967,701 + GFF2080 0.73 -1.0
967,818 + GFF2080 0.85 -0.3
967,819 - GFF2080 0.85 +0.4

Or see this region's nucleotide sequence