Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2073 and GFF2074 are separated by 99 nucleotides GFF2074 and GFF2075 overlap by 1 nucleotides GFF2075 and GFF2076 are separated by 18 nucleotides GFF2076 and GFF2077 are separated by 454 nucleotides
GFF2073 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 958,770 to 960,617
GFF2073
GFF2074 - hypothetical protein, at 960,717 to 961,046
GFF2074
GFF2075 - HipA protein, at 961,046 to 962,374
GFF2075
GFF2076 - Maebl, at 962,393 to 962,794
GFF2076
GFF2077 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 963,249 to 965,489
GFF2077
Position (kb) 961
962
963 Strain fitness (log2 ratio) -2
-1
0
1
2 at 960.204 kb on + strand, within GFF2073 at 960.555 kb on + strand at 960.556 kb on - strand at 960.556 kb on - strand at 960.556 kb on - strand at 960.620 kb on + strand at 960.636 kb on + strand at 960.636 kb on + strand at 960.637 kb on - strand at 960.664 kb on - strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.691 kb on - strand at 960.691 kb on - strand at 961.044 kb on + strand at 961.044 kb on + strand at 961.044 kb on + strand at 961.045 kb on - strand at 961.045 kb on - strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.125 kb on - strand at 961.125 kb on - strand at 961.125 kb on - strand at 961.223 kb on + strand, within GFF2075 at 961.223 kb on + strand, within GFF2075 at 961.224 kb on - strand, within GFF2075 at 961.844 kb on + strand, within GFF2075 at 961.844 kb on + strand, within GFF2075 at 961.844 kb on + strand, within GFF2075 at 961.845 kb on - strand, within GFF2075 at 962.018 kb on + strand, within GFF2075 at 962.018 kb on + strand, within GFF2075 at 962.019 kb on - strand, within GFF2075 at 962.019 kb on - strand, within GFF2075 at 962.036 kb on + strand, within GFF2075 at 962.036 kb on + strand, within GFF2075 at 962.036 kb on + strand, within GFF2075 at 962.036 kb on + strand, within GFF2075 at 962.037 kb on - strand, within GFF2075 at 962.037 kb on - strand, within GFF2075 at 962.037 kb on - strand, within GFF2075 at 962.060 kb on + strand, within GFF2075 at 962.060 kb on + strand, within GFF2075 at 962.060 kb on + strand, within GFF2075 at 962.060 kb on + strand, within GFF2075 at 962.060 kb on + strand, within GFF2075 at 962.061 kb on - strand, within GFF2075 at 962.061 kb on - strand, within GFF2075 at 962.138 kb on + strand, within GFF2075 at 962.138 kb on + strand, within GFF2075 at 962.138 kb on + strand, within GFF2075 at 962.138 kb on + strand, within GFF2075 at 962.138 kb on + strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.139 kb on - strand, within GFF2075 at 962.147 kb on + strand, within GFF2075 at 962.147 kb on + strand, within GFF2075 at 962.147 kb on + strand, within GFF2075 at 962.147 kb on + strand, within GFF2075 at 962.148 kb on - strand, within GFF2075 at 962.148 kb on - strand, within GFF2075 at 962.148 kb on - strand, within GFF2075 at 962.148 kb on - strand, within GFF2075 at 962.148 kb on - strand, within GFF2075 at 962.148 kb on - strand, within GFF2075 at 962.386 kb on + strand at 962.387 kb on - strand at 962.387 kb on - strand at 962.404 kb on - strand at 962.463 kb on + strand, within GFF2076 at 962.463 kb on + strand, within GFF2076 at 962.463 kb on + strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.701 kb on - strand, within GFF2076 at 962.728 kb on - strand, within GFF2076 at 962.916 kb on + strand at 962.972 kb on + strand at 962.973 kb on - strand at 962.973 kb on - strand at 962.973 kb on - strand at 962.973 kb on - strand at 963.089 kb on + strand at 963.091 kb on + strand at 963.092 kb on - strand at 963.203 kb on + strand at 963.241 kb on + strand at 963.241 kb on + strand at 963.242 kb on - strand at 963.242 kb on - strand at 963.250 kb on + strand at 963.250 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.345 kb on + strand at 963.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 960,204 + GFF2073 0.78 -0.1 960,555 + +0.5 960,556 - -0.7 960,556 - +0.0 960,556 - -1.2 960,620 + +0.5 960,636 + -0.1 960,636 + +0.1 960,637 - +0.4 960,664 - +0.5 960,690 + +0.6 960,690 + -0.6 960,691 - +0.0 960,691 - +1.0 961,044 + -0.2 961,044 + -0.5 961,044 + +0.4 961,045 - -0.4 961,045 - +0.0 961,124 + +0.1 961,124 + -0.7 961,124 + +0.9 961,124 + -1.1 961,124 + -0.2 961,124 + +0.0 961,124 + +0.4 961,124 + -1.1 961,124 + -1.1 961,124 + +0.6 961,124 + -0.9 961,124 + +0.8 961,125 - -1.1 961,125 - +0.4 961,125 - -2.2 961,223 + GFF2075 0.13 -1.0 961,223 + GFF2075 0.13 +2.0 961,224 - GFF2075 0.13 +0.2 961,844 + GFF2075 0.60 +0.2 961,844 + GFF2075 0.60 +0.2 961,844 + GFF2075 0.60 -0.1 961,845 - GFF2075 0.60 -0.5 962,018 + GFF2075 0.73 -1.0 962,018 + GFF2075 0.73 -0.1 962,019 - GFF2075 0.73 +0.6 962,019 - GFF2075 0.73 -0.8 962,036 + GFF2075 0.74 +0.5 962,036 + GFF2075 0.74 -1.1 962,036 + GFF2075 0.74 +0.3 962,036 + GFF2075 0.74 +0.3 962,037 - GFF2075 0.75 +0.5 962,037 - GFF2075 0.75 -1.1 962,037 - GFF2075 0.75 -2.0 962,060 + GFF2075 0.76 -0.4 962,060 + GFF2075 0.76 -1.0 962,060 + GFF2075 0.76 -0.2 962,060 + GFF2075 0.76 -0.2 962,060 + GFF2075 0.76 -0.8 962,061 - GFF2075 0.76 -0.1 962,061 - GFF2075 0.76 -0.6 962,138 + GFF2075 0.82 +0.0 962,138 + GFF2075 0.82 +1.2 962,138 + GFF2075 0.82 -1.0 962,138 + GFF2075 0.82 -0.3 962,138 + GFF2075 0.82 -0.1 962,139 - GFF2075 0.82 -0.4 962,139 - GFF2075 0.82 -1.3 962,139 - GFF2075 0.82 +0.1 962,139 - GFF2075 0.82 +0.7 962,139 - GFF2075 0.82 +0.1 962,139 - GFF2075 0.82 -0.8 962,139 - GFF2075 0.82 +1.0 962,147 + GFF2075 0.83 -0.5 962,147 + GFF2075 0.83 -0.8 962,147 + GFF2075 0.83 +0.5 962,147 + GFF2075 0.83 +0.5 962,148 - GFF2075 0.83 +0.3 962,148 - GFF2075 0.83 +0.0 962,148 - GFF2075 0.83 -0.4 962,148 - GFF2075 0.83 -0.6 962,148 - GFF2075 0.83 -0.1 962,148 - GFF2075 0.83 -1.8 962,386 + -0.0 962,387 - +0.0 962,387 - +0.3 962,404 - +0.0 962,463 + GFF2076 0.17 +0.0 962,463 + GFF2076 0.17 -0.3 962,463 + GFF2076 0.17 -0.8 962,464 - GFF2076 0.18 +0.5 962,464 - GFF2076 0.18 -1.0 962,464 - GFF2076 0.18 -0.1 962,464 - GFF2076 0.18 -0.6 962,701 - GFF2076 0.77 +0.0 962,728 - GFF2076 0.83 -0.1 962,916 + -0.3 962,972 + -1.2 962,973 - -0.2 962,973 - -0.4 962,973 - +0.4 962,973 - -0.2 963,089 + -0.7 963,091 + -0.9 963,092 - +0.4 963,203 + +0.4 963,241 + -0.4 963,241 + -0.2 963,242 - -0.5 963,242 - +0.2 963,250 + +0.2 963,250 + -2.5 963,265 + +0.4 963,265 + +0.1 963,265 + -0.5 963,265 + +0.0 963,265 + +0.0 963,265 + +0.4 963,266 - +0.2 963,266 - -0.6 963,266 - +1.0 963,266 - +0.1 963,266 - +0.4 963,345 + -0.2 963,346 - -0.5
Or see this region's nucleotide sequence