Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2026

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2025 and GFF2026 are separated by 309 nucleotidesGFF2026 and GFF2027 are separated by 492 nucleotides GFF2025 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 904,117 to 904,887 GFF2025 GFF2026 - hypothetical protein, at 905,197 to 905,433 GFF2026 GFF2027 - hypothetical protein, at 905,926 to 906,678 GFF2027 Position (kb) 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.207 kb on + strand, within GFF2025at 904.207 kb on + strand, within GFF2025at 904.208 kb on - strand, within GFF2025at 904.297 kb on + strand, within GFF2025at 904.297 kb on + strand, within GFF2025at 904.297 kb on + strand, within GFF2025at 904.298 kb on - strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.451 kb on + strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.452 kb on - strand, within GFF2025at 904.549 kb on + strand, within GFF2025at 904.549 kb on + strand, within GFF2025at 904.549 kb on + strand, within GFF2025at 904.550 kb on - strand, within GFF2025at 904.559 kb on - strand, within GFF2025at 904.624 kb on + strand, within GFF2025at 904.624 kb on + strand, within GFF2025at 904.624 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.693 kb on + strand, within GFF2025at 904.694 kb on + strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.694 kb on - strand, within GFF2025at 904.876 kb on + strandat 904.876 kb on + strandat 904.894 kb on + strandat 904.894 kb on + strandat 904.895 kb on - strandat 904.895 kb on - strandat 904.895 kb on - strandat 904.895 kb on - strandat 904.939 kb on - strandat 904.967 kb on - strandat 904.967 kb on - strandat 905.300 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.305 kb on + strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.306 kb on - strand, within GFF2026at 905.345 kb on + strand, within GFF2026at 905.345 kb on + strand, within GFF2026at 905.531 kb on + strandat 905.532 kb on - strandat 905.725 kb on + strandat 905.725 kb on + strandat 905.726 kb on - strandat 905.726 kb on - strandat 905.805 kb on + strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 906.110 kb on + strand, within GFF2027at 906.110 kb on + strand, within GFF2027at 906.111 kb on - strand, within GFF2027at 906.159 kb on - strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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904,207 + GFF2025 0.12 +0.1
904,207 + GFF2025 0.12 +0.0
904,208 - GFF2025 0.12 +0.3
904,297 + GFF2025 0.23 +0.1
904,297 + GFF2025 0.23 +0.8
904,297 + GFF2025 0.23 +0.3
904,298 - GFF2025 0.23 -0.4
904,451 + GFF2025 0.43 -0.4
904,451 + GFF2025 0.43 -0.6
904,451 + GFF2025 0.43 +0.3
904,451 + GFF2025 0.43 +0.3
904,451 + GFF2025 0.43 -0.1
904,451 + GFF2025 0.43 +1.0
904,451 + GFF2025 0.43 +2.0
904,451 + GFF2025 0.43 +0.6
904,451 + GFF2025 0.43 +0.1
904,451 + GFF2025 0.43 +1.3
904,452 - GFF2025 0.43 +0.4
904,452 - GFF2025 0.43 -0.2
904,452 - GFF2025 0.43 +0.2
904,452 - GFF2025 0.43 +1.0
904,452 - GFF2025 0.43 -0.7
904,452 - GFF2025 0.43 -0.2
904,452 - GFF2025 0.43 +0.4
904,452 - GFF2025 0.43 -1.0
904,452 - GFF2025 0.43 +0.0
904,549 + GFF2025 0.56 -0.3
904,549 + GFF2025 0.56 +0.2
904,549 + GFF2025 0.56 -0.2
904,550 - GFF2025 0.56 -0.5
904,559 - GFF2025 0.57 +0.3
904,624 + GFF2025 0.66 +0.4
904,624 + GFF2025 0.66 +0.9
904,624 + GFF2025 0.66 -0.3
904,693 + GFF2025 0.75 -0.5
904,693 + GFF2025 0.75 +0.5
904,693 + GFF2025 0.75 -0.5
904,693 + GFF2025 0.75 +1.2
904,693 + GFF2025 0.75 -0.8
904,693 + GFF2025 0.75 -0.6
904,693 + GFF2025 0.75 +0.3
904,693 + GFF2025 0.75 +0.1
904,693 + GFF2025 0.75 -0.6
904,693 + GFF2025 0.75 +1.4
904,693 + GFF2025 0.75 +0.0
904,693 + GFF2025 0.75 +0.0
904,693 + GFF2025 0.75 +0.1
904,693 + GFF2025 0.75 -1.0
904,693 + GFF2025 0.75 +1.2
904,693 + GFF2025 0.75 -0.3
904,693 + GFF2025 0.75 -0.1
904,693 + GFF2025 0.75 +0.0
904,693 + GFF2025 0.75 -0.2
904,693 + GFF2025 0.75 -0.5
904,694 + GFF2025 0.75 +0.5
904,694 - GFF2025 0.75 -1.6
904,694 - GFF2025 0.75 +0.1
904,694 - GFF2025 0.75 +0.2
904,694 - GFF2025 0.75 +1.0
904,694 - GFF2025 0.75 +0.0
904,694 - GFF2025 0.75 +0.1
904,694 - GFF2025 0.75 +0.9
904,694 - GFF2025 0.75 -0.3
904,694 - GFF2025 0.75 +0.3
904,694 - GFF2025 0.75 -0.6
904,694 - GFF2025 0.75 -0.6
904,694 - GFF2025 0.75 -0.1
904,694 - GFF2025 0.75 +0.0
904,876 + -0.5
904,876 + +0.2
904,894 + -0.1
904,894 + +0.2
904,895 - -0.1
904,895 - +0.1
904,895 - -0.6
904,895 - +0.0
904,939 - +0.2
904,967 - +1.0
904,967 - -0.6
905,300 + GFF2026 0.43 -0.3
905,305 + GFF2026 0.46 +0.0
905,305 + GFF2026 0.46 +0.4
905,305 + GFF2026 0.46 +0.6
905,305 + GFF2026 0.46 -0.2
905,305 + GFF2026 0.46 -0.7
905,306 - GFF2026 0.46 -0.0
905,306 - GFF2026 0.46 +0.0
905,306 - GFF2026 0.46 -0.2
905,306 - GFF2026 0.46 -0.7
905,306 - GFF2026 0.46 +0.4
905,345 + GFF2026 0.62 -1.4
905,345 + GFF2026 0.62 -0.2
905,531 + +1.2
905,532 - -0.1
905,725 + -0.1
905,725 + +0.6
905,726 - -0.9
905,726 - -0.2
905,805 + -0.2
905,806 - -0.3
905,806 - +0.6
905,806 - +0.5
905,806 - -0.6
906,110 + GFF2027 0.24 -1.3
906,110 + GFF2027 0.24 -2.6
906,111 - GFF2027 0.25 -0.6
906,159 - GFF2027 0.31 -0.6
906,194 + GFF2027 0.36 +0.0
906,194 + GFF2027 0.36 -3.2
906,194 + GFF2027 0.36 -2.7
906,194 + GFF2027 0.36 -3.2
906,194 + GFF2027 0.36 -1.8
906,195 - GFF2027 0.36 -2.0
906,195 - GFF2027 0.36 -1.3
906,195 - GFF2027 0.36 -1.8
906,195 - GFF2027 0.36 -2.1
906,195 - GFF2027 0.36 -3.5
906,195 - GFF2027 0.36 -0.6
906,195 - GFF2027 0.36 -1.0
906,195 - GFF2027 0.36 -2.3

Or see this region's nucleotide sequence