Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1972

Experiment: Ying_Others16 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1970 and GFF1971 are separated by 69 nucleotidesGFF1971 and GFF1972 are separated by 154 nucleotidesGFF1972 and GFF1973 are separated by 150 nucleotides GFF1970 - Universal stress family protein, at 843,900 to 844,322 GFF1970 GFF1971 - Transcriptional regulator, TetR family, at 844,392 to 844,976 GFF1971 GFF1972 - Transcriptional regulator, at 845,131 to 846,060 GFF1972 GFF1973 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 846,211 to 847,563 GFF1973 Position (kb) 845 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 844.456 kb on + strand, within GFF1971at 844.507 kb on + strand, within GFF1971at 844.508 kb on - strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 845.042 kb on + strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.525 kb on + strand, within GFF1972at 845.525 kb on + strand, within GFF1972at 845.526 kb on - strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 846.108 kb on + strandat 846.109 kb on - strandat 846.109 kb on - strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.173 kb on - strandat 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.410 kb on - strand, within GFF1973at 846.550 kb on + strand, within GFF1973at 846.551 kb on - strand, within GFF1973at 846.551 kb on - strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.628 kb on + strand, within GFF1973at 846.628 kb on + strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.782 kb on - strand, within GFF1973at 846.782 kb on - strand, within GFF1973at 846.994 kb on + strand, within GFF1973at 846.995 kb on - strand, within GFF1973at 847.039 kb on + strand, within GFF1973at 847.040 kb on - strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
remove
844,456 + GFF1971 0.11 -0.3
844,507 + GFF1971 0.20 +1.5
844,508 - GFF1971 0.20 +1.1
844,516 + GFF1971 0.21 +1.0
844,516 + GFF1971 0.21 +0.9
844,517 - GFF1971 0.21 +0.8
844,517 - GFF1971 0.21 +1.5
844,517 - GFF1971 0.21 +1.1
844,517 - GFF1971 0.21 -0.3
844,621 + GFF1971 0.39 +0.8
844,621 + GFF1971 0.39 +0.7
844,621 + GFF1971 0.39 +0.7
844,621 + GFF1971 0.39 +0.4
844,621 + GFF1971 0.39 +2.8
844,621 + GFF1971 0.39 +1.6
844,621 + GFF1971 0.39 +0.8
844,621 + GFF1971 0.39 +2.6
844,622 - GFF1971 0.39 +1.3
844,622 - GFF1971 0.39 +1.5
844,622 - GFF1971 0.39 +1.7
844,622 - GFF1971 0.39 +0.7
844,622 - GFF1971 0.39 +1.0
844,852 + GFF1971 0.79 +0.2
844,852 + GFF1971 0.79 +1.3
844,852 + GFF1971 0.79 +1.3
844,852 + GFF1971 0.79 +1.0
844,852 + GFF1971 0.79 +0.9
844,852 + GFF1971 0.79 +1.0
844,852 + GFF1971 0.79 +1.3
844,852 + GFF1971 0.79 +0.7
844,853 - GFF1971 0.79 +0.8
844,853 - GFF1971 0.79 +0.3
844,853 - GFF1971 0.79 +1.2
844,853 - GFF1971 0.79 +1.8
844,853 - GFF1971 0.79 +1.0
844,853 - GFF1971 0.79 +1.1
844,853 - GFF1971 0.79 +0.5
845,042 + +0.9
845,043 - +0.5
845,043 - +0.4
845,043 - +3.3
845,525 + GFF1972 0.42 -0.5
845,525 + GFF1972 0.42 +1.6
845,526 - GFF1972 0.42 -1.2
845,549 + GFF1972 0.45 -0.4
845,549 + GFF1972 0.45 -0.8
845,549 + GFF1972 0.45 -0.4
845,549 + GFF1972 0.45 -0.3
845,549 + GFF1972 0.45 +0.0
845,549 + GFF1972 0.45 +1.4
845,549 + GFF1972 0.45 -1.0
845,549 + GFF1972 0.45 -0.0
845,550 - GFF1972 0.45 -0.7
845,550 - GFF1972 0.45 -0.6
845,550 - GFF1972 0.45 +1.0
845,550 - GFF1972 0.45 -0.3
845,550 - GFF1972 0.45 -2.9
846,108 + +1.0
846,109 - -0.6
846,109 - +0.0
846,163 + -0.1
846,163 + +0.3
846,163 + +0.0
846,163 + -1.0
846,164 - -0.7
846,164 - -2.2
846,164 - +0.0
846,164 - -0.3
846,173 - -0.6
846,361 + GFF1973 0.11 +0.4
846,361 + GFF1973 0.11 -0.8
846,361 + GFF1973 0.11 -2.1
846,361 + GFF1973 0.11 -0.6
846,361 + GFF1973 0.11 -1.1
846,362 - GFF1973 0.11 -0.7
846,362 - GFF1973 0.11 -1.4
846,362 - GFF1973 0.11 -0.6
846,362 - GFF1973 0.11 -1.6
846,362 - GFF1973 0.11 -0.6
846,410 - GFF1973 0.15 -0.6
846,550 + GFF1973 0.25 -1.3
846,551 - GFF1973 0.25 -0.7
846,551 - GFF1973 0.25 -0.4
846,598 + GFF1973 0.29 -0.7
846,598 + GFF1973 0.29 -0.9
846,598 + GFF1973 0.29 -0.2
846,598 + GFF1973 0.29 -1.6
846,599 - GFF1973 0.29 -1.0
846,599 - GFF1973 0.29 -0.5
846,599 - GFF1973 0.29 -2.0
846,599 - GFF1973 0.29 -0.9
846,599 - GFF1973 0.29 -1.0
846,599 - GFF1973 0.29 -1.2
846,628 + GFF1973 0.31 +0.6
846,628 + GFF1973 0.31 -1.3
846,629 - GFF1973 0.31 -1.6
846,629 - GFF1973 0.31 -1.0
846,629 - GFF1973 0.31 +0.2
846,629 - GFF1973 0.31 -1.4
846,631 + GFF1973 0.31 -1.1
846,631 + GFF1973 0.31 -1.1
846,631 + GFF1973 0.31 -1.1
846,631 + GFF1973 0.31 -0.8
846,631 + GFF1973 0.31 -0.8
846,631 + GFF1973 0.31 -1.6
846,631 + GFF1973 0.31 -1.8
846,631 + GFF1973 0.31 -1.5
846,632 - GFF1973 0.31 -1.8
846,632 - GFF1973 0.31 -1.3
846,632 - GFF1973 0.31 -2.1
846,632 - GFF1973 0.31 -0.3
846,632 - GFF1973 0.31 -0.6
846,632 - GFF1973 0.31 -1.1
846,632 - GFF1973 0.31 -1.3
846,632 - GFF1973 0.31 -0.5
846,632 - GFF1973 0.31 +0.0
846,781 + GFF1973 0.42 -1.4
846,781 + GFF1973 0.42 -0.9
846,781 + GFF1973 0.42 +0.4
846,781 + GFF1973 0.42 -1.1
846,781 + GFF1973 0.42 -0.5
846,781 + GFF1973 0.42 -0.7
846,782 - GFF1973 0.42 -0.8
846,782 - GFF1973 0.42 -0.8
846,994 + GFF1973 0.58 -1.2
846,995 - GFF1973 0.58 -1.8
847,039 + GFF1973 0.61 +0.7
847,040 - GFF1973 0.61 +0.3
847,054 + GFF1973 0.62 -1.2
847,054 + GFF1973 0.62 -0.3
847,055 - GFF1973 0.62 -1.6
847,055 - GFF1973 0.62 -0.7
847,055 - GFF1973 0.62 -1.5

Or see this region's nucleotide sequence