Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1931 and GFF1932 are separated by 36 nucleotides GFF1932 and GFF1933 overlap by 4 nucleotides GFF1933 and GFF1934 overlap by 4 nucleotides
GFF1931 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 806,511 to 807,497
GFF1931
GFF1932 - Bll5738 protein, at 807,534 to 808,109
GFF1932
GFF1933 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 808,106 to 809,257
GFF1933
GFF1934 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 809,254 to 810,477
GFF1934
Position (kb) 808
809
810 Strain fitness (log2 ratio) -2
-1
0
1 at 807.148 kb on - strand, within GFF1931 at 807.148 kb on - strand, within GFF1931 at 807.208 kb on - strand, within GFF1931 at 807.309 kb on + strand, within GFF1931 at 807.309 kb on + strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.315 kb on + strand, within GFF1931 at 807.316 kb on - strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.391 kb on + strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.588 kb on + strand at 807.588 kb on + strand at 807.696 kb on + strand, within GFF1932 at 808.045 kb on - strand, within GFF1932 at 808.045 kb on - strand, within GFF1932 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.512 kb on - strand, within GFF1933 at 808.754 kb on + strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 809.132 kb on + strand, within GFF1933 at 809.281 kb on + strand at 809.281 kb on + strand at 809.281 kb on + strand at 809.281 kb on + strand at 809.281 kb on + strand at 809.282 kb on - strand at 809.282 kb on - strand at 809.282 kb on - strand at 809.282 kb on - strand at 809.309 kb on - strand at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.612 kb on - strand, within GFF1934 at 809.612 kb on - strand, within GFF1934 at 809.612 kb on - strand, within GFF1934 at 809.881 kb on + strand, within GFF1934 at 809.882 kb on - strand, within GFF1934 at 809.882 kb on - strand, within GFF1934 at 809.882 kb on - strand, within GFF1934
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 807,148 - GFF1931 0.65 -0.4 807,148 - GFF1931 0.65 -0.3 807,208 - GFF1931 0.71 -0.7 807,309 + GFF1931 0.81 +0.2 807,309 + GFF1931 0.81 +1.0 807,310 - GFF1931 0.81 +1.0 807,310 - GFF1931 0.81 -0.6 807,310 - GFF1931 0.81 -0.9 807,315 + GFF1931 0.81 -1.1 807,316 - GFF1931 0.82 +0.2 807,390 + GFF1931 0.89 +1.0 807,390 + GFF1931 0.89 -0.5 807,390 + GFF1931 0.89 -0.1 807,390 + GFF1931 0.89 -0.3 807,390 + GFF1931 0.89 +0.6 807,390 + GFF1931 0.89 +0.5 807,391 + GFF1931 0.89 -0.8 807,391 - GFF1931 0.89 -0.7 807,391 - GFF1931 0.89 +0.0 807,391 - GFF1931 0.89 -0.3 807,588 + +0.1 807,588 + +0.0 807,696 + GFF1932 0.28 +1.0 808,045 - GFF1932 0.89 +0.4 808,045 - GFF1932 0.89 +0.3 808,406 + GFF1933 0.26 -0.4 808,406 + GFF1933 0.26 +0.3 808,406 + GFF1933 0.26 +0.6 808,406 + GFF1933 0.26 +0.3 808,407 - GFF1933 0.26 +0.6 808,407 - GFF1933 0.26 +0.1 808,407 - GFF1933 0.26 -0.6 808,407 - GFF1933 0.26 +0.4 808,407 - GFF1933 0.26 +0.3 808,407 - GFF1933 0.26 +0.4 808,512 - GFF1933 0.35 +0.2 808,754 + GFF1933 0.56 -0.2 808,755 - GFF1933 0.56 +1.2 808,755 - GFF1933 0.56 -1.0 808,755 - GFF1933 0.56 -0.3 809,132 + GFF1933 0.89 +0.2 809,281 + -0.3 809,281 + +0.4 809,281 + -0.6 809,281 + -0.8 809,281 + +0.1 809,282 - +0.3 809,282 - -0.6 809,282 - +0.0 809,282 - -2.4 809,309 - +1.0 809,611 + GFF1934 0.29 -2.6 809,611 + GFF1934 0.29 -0.4 809,611 + GFF1934 0.29 -0.4 809,611 + GFF1934 0.29 +0.8 809,611 + GFF1934 0.29 -0.7 809,611 + GFF1934 0.29 +0.8 809,612 - GFF1934 0.29 +0.1 809,612 - GFF1934 0.29 -0.9 809,612 - GFF1934 0.29 +0.4 809,881 + GFF1934 0.51 -1.4 809,882 - GFF1934 0.51 +0.2 809,882 - GFF1934 0.51 +0.0 809,882 - GFF1934 0.51 +0.8
Or see this region's nucleotide sequence