Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1820

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
685,416	+		GFF1818	0.63	+0.9
685,417	-		GFF1818	0.63	-1.6
685,417	-		GFF1818	0.63	+0.2
685,653	+				-0.3
685,653	+				-0.2
685,653	+				-0.4
685,654	-				-0.1
685,732	+				-0.2
685,732	+				+0.2
685,733	-				-0.7
686,144	-				+0.3
686,179	+				+0.2
686,179	+				-1.2
686,292	+		GFF1820	0.12	+0.2
686,292	+		GFF1820	0.12	+0.4
686,292	+		GFF1820	0.12	-0.3
686,610	+		GFF1820	0.63	-1.3
686,610	+		GFF1820	0.63	-2.0
686,658	+		GFF1820	0.71	+0.1
686,845	+				+0.1
687,209	-		GFF1821	0.38	+0.8
687,209	-		GFF1821	0.38	+0.3