Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1784 and GFF1785 are separated by 105 nucleotides GFF1785 and GFF2354 are separated by 112 nucleotides GFF2354 and GFF1786 are separated by 59 nucleotides GFF1786 and GFF1787 are separated by 30 nucleotides
GFF1784 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 648,415 to 649,443
GFF1784
GFF1785 - hypothetical protein, at 649,549 to 649,917
GFF1785
GFF2354 - tRNA-Phe-GAA, at 650,030 to 650,102
GFF2354
GFF1786 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 650,162 to 650,860
GFF1786
GFF1787 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 650,891 to 653,179
GFF1787
Position (kb) 650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 649.183 kb on + strand, within GFF1784 at 649.183 kb on + strand, within GFF1784 at 649.183 kb on + strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.231 kb on + strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.763 kb on + strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.764 kb on - strand, within GFF1785 at 649.879 kb on + strand, within GFF1785 at 650.123 kb on - strand at 650.123 kb on - strand at 650.896 kb on + strand at 650.897 kb on - strand at 650.897 kb on - strand at 650.897 kb on - strand at 650.912 kb on + strand at 650.912 kb on + strand at 650.912 kb on + strand at 650.912 kb on + strand at 650.912 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.297 kb on + strand, within GFF1787 at 651.298 kb on - strand, within GFF1787
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 649,183 + GFF1784 0.75 -0.1 649,183 + GFF1784 0.75 +0.1 649,183 + GFF1784 0.75 -1.6 649,184 - GFF1784 0.75 +0.3 649,184 - GFF1784 0.75 +0.7 649,184 - GFF1784 0.75 +0.0 649,184 - GFF1784 0.75 -0.8 649,184 - GFF1784 0.75 +0.5 649,231 + GFF1784 0.79 +0.4 649,232 - GFF1784 0.79 -0.7 649,232 - GFF1784 0.79 +0.6 649,232 - GFF1784 0.79 -0.0 649,232 - GFF1784 0.79 +0.1 649,232 - GFF1784 0.79 -0.0 649,763 + GFF1785 0.58 +0.8 649,764 - GFF1785 0.58 +0.5 649,764 - GFF1785 0.58 +0.3 649,764 - GFF1785 0.58 -0.1 649,764 - GFF1785 0.58 -1.6 649,764 - GFF1785 0.58 -0.8 649,764 - GFF1785 0.58 -1.0 649,764 - GFF1785 0.58 -0.6 649,879 + GFF1785 0.89 +0.9 650,123 - +0.4 650,123 - +1.2 650,896 + +0.3 650,897 - -0.1 650,897 - +1.6 650,897 - -0.8 650,912 + -3.1 650,912 + -2.7 650,912 + -1.8 650,912 + -1.6 650,912 + -1.0 651,045 + -2.5 651,045 + -2.0 651,045 + -1.3 651,045 + -2.7 651,045 + -2.8 651,045 + -3.7 651,045 + -0.6 651,045 + -2.7 651,045 + -2.3 651,046 - -1.3 651,046 - -1.0 651,046 - -2.7 651,046 - -3.5 651,046 - -1.6 651,046 - -0.0 651,297 + GFF1787 0.18 -0.6 651,298 - GFF1787 0.18 -1.3
Or see this region's nucleotide sequence