Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1739

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1738 and GFF1739 are separated by 90 nucleotidesGFF1739 and GFF1740 are separated by 88 nucleotidesGFF1740 and GFF1741 are separated by 106 nucleotides GFF1738 - Magnesium and cobalt efflux protein CorC, at 593,696 to 594,562 GFF1738 GFF1739 - Histone acetyltransferase HPA2 and related acetyltransferases, at 594,653 to 595,387 GFF1739 GFF1740 - Transcriptional regulator, AsnC family, at 595,476 to 595,958 GFF1740 GFF1741 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 596,065 to 597,186 GFF1741 Position (kb) 594 595 596Strain fitness (log2 ratio) -2 -1 0 1at 593.687 kb on + strandat 593.687 kb on + strandat 593.687 kb on + strandat 593.687 kb on + strandat 593.687 kb on + strandat 593.688 kb on - strandat 593.688 kb on - strandat 593.688 kb on - strandat 593.688 kb on - strandat 594.541 kb on + strandat 594.582 kb on + strandat 594.582 kb on + strandat 594.583 kb on - strandat 594.598 kb on + strandat 594.753 kb on + strand, within GFF1739at 594.753 kb on + strand, within GFF1739at 594.754 kb on - strand, within GFF1739at 594.754 kb on - strand, within GFF1739at 594.754 kb on - strand, within GFF1739at 594.754 kb on - strand, within GFF1739at 594.984 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.041 kb on + strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.042 kb on - strand, within GFF1739at 595.146 kb on + strand, within GFF1739at 595.146 kb on + strand, within GFF1739at 595.146 kb on + strand, within GFF1739at 595.147 kb on - strand, within GFF1739at 595.147 kb on - strand, within GFF1739at 595.147 kb on - strand, within GFF1739at 595.191 kb on + strand, within GFF1739at 595.192 kb on - strand, within GFF1739at 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.399 kb on + strandat 595.400 kb on - strandat 595.400 kb on - strandat 595.400 kb on - strandat 595.400 kb on - strandat 595.400 kb on - strandat 595.406 kb on + strandat 595.412 kb on + strandat 595.412 kb on + strandat 595.413 kb on - strandat 595.413 kb on - strandat 595.413 kb on - strandat 595.413 kb on - strandat 595.413 kb on - strandat 595.414 kb on + strandat 595.414 kb on + strandat 595.414 kb on + strandat 595.415 kb on + strandat 595.415 kb on - strandat 595.415 kb on - strandat 595.415 kb on - strandat 595.436 kb on + strandat 595.437 kb on - strandat 595.582 kb on + strand, within GFF1740at 595.582 kb on + strand, within GFF1740at 595.583 kb on - strand, within GFF1740at 595.792 kb on + strand, within GFF1740at 595.792 kb on + strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.793 kb on - strand, within GFF1740at 595.882 kb on + strand, within GFF1740at 595.882 kb on + strand, within GFF1740at 595.882 kb on + strand, within GFF1740at 595.882 kb on + strand, within GFF1740at 595.882 kb on + strand, within GFF1740at 595.883 kb on - strand, within GFF1740at 595.883 kb on - strand, within GFF1740at 595.883 kb on - strand, within GFF1740at 595.883 kb on - strand, within GFF1740at 595.934 kb on + strandat 595.935 kb on - strandat 595.937 kb on - strandat 596.029 kb on + strandat 596.029 kb on + strandat 596.030 kb on - strandat 596.245 kb on + strand, within GFF1741at 596.245 kb on + strand, within GFF1741at 596.245 kb on + strand, within GFF1741at 596.246 kb on - strand, within GFF1741at 596.246 kb on - strand, within GFF1741at 596.371 kb on + strand, within GFF1741at 596.371 kb on + strand, within GFF1741at 596.371 kb on + strand, within GFF1741at 596.371 kb on + strand, within GFF1741at 596.372 kb on - strand, within GFF1741

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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593,687 + +0.3
593,687 + -0.0
593,687 + +0.3
593,687 + -0.8
593,687 + +0.8
593,688 - -0.0
593,688 - +0.1
593,688 - -0.1
593,688 - -0.1
594,541 + +0.2
594,582 + +0.1
594,582 + -0.0
594,583 - +0.3
594,598 + +1.3
594,753 + GFF1739 0.14 +0.2
594,753 + GFF1739 0.14 -0.1
594,754 - GFF1739 0.14 -0.0
594,754 - GFF1739 0.14 +0.5
594,754 - GFF1739 0.14 +0.5
594,754 - GFF1739 0.14 -1.3
594,984 + GFF1739 0.45 -0.3
595,041 + GFF1739 0.53 -0.1
595,041 + GFF1739 0.53 +1.0
595,041 + GFF1739 0.53 -0.0
595,041 + GFF1739 0.53 +0.2
595,041 + GFF1739 0.53 -0.7
595,041 + GFF1739 0.53 +0.0
595,041 + GFF1739 0.53 -0.3
595,041 + GFF1739 0.53 -0.2
595,042 - GFF1739 0.53 -0.5
595,042 - GFF1739 0.53 -0.6
595,042 - GFF1739 0.53 -1.7
595,042 - GFF1739 0.53 -0.2
595,042 - GFF1739 0.53 -0.3
595,042 - GFF1739 0.53 -1.1
595,042 - GFF1739 0.53 +0.0
595,146 + GFF1739 0.67 +1.1
595,146 + GFF1739 0.67 -0.4
595,146 + GFF1739 0.67 +0.4
595,147 - GFF1739 0.67 -0.0
595,147 - GFF1739 0.67 -0.1
595,147 - GFF1739 0.67 -0.1
595,191 + GFF1739 0.73 -1.5
595,192 - GFF1739 0.73 -0.8
595,399 + +0.3
595,399 + -0.3
595,399 + +0.3
595,399 + +0.2
595,399 + -1.1
595,399 + +0.2
595,399 + +0.4
595,399 + +0.2
595,399 + -1.8
595,400 - +0.3
595,400 - -0.1
595,400 - -0.2
595,400 - +0.5
595,400 - -0.0
595,406 + +0.5
595,412 + -0.1
595,412 + +1.0
595,413 - -0.2
595,413 - +0.4
595,413 - -1.0
595,413 - -0.0
595,413 - +0.1
595,414 + +0.4
595,414 + -1.0
595,414 + +0.4
595,415 + -0.1
595,415 - -0.6
595,415 - +0.4
595,415 - -0.3
595,436 + +0.8
595,437 - -0.7
595,582 + GFF1740 0.22 -0.3
595,582 + GFF1740 0.22 -0.0
595,583 - GFF1740 0.22 +0.4
595,792 + GFF1740 0.65 -0.6
595,792 + GFF1740 0.65 -0.3
595,793 - GFF1740 0.66 -1.2
595,793 - GFF1740 0.66 +0.3
595,793 - GFF1740 0.66 +0.1
595,793 - GFF1740 0.66 -0.2
595,793 - GFF1740 0.66 +1.2
595,793 - GFF1740 0.66 +0.1
595,793 - GFF1740 0.66 -0.7
595,882 + GFF1740 0.84 +0.4
595,882 + GFF1740 0.84 +0.1
595,882 + GFF1740 0.84 +0.2
595,882 + GFF1740 0.84 +0.0
595,882 + GFF1740 0.84 +0.2
595,883 - GFF1740 0.84 +0.2
595,883 - GFF1740 0.84 -0.6
595,883 - GFF1740 0.84 -0.1
595,883 - GFF1740 0.84 -0.1
595,934 + +0.3
595,935 - +0.2
595,937 - -0.7
596,029 + -0.6
596,029 + -1.1
596,030 - -0.5
596,245 + GFF1741 0.16 -0.1
596,245 + GFF1741 0.16 +0.3
596,245 + GFF1741 0.16 +0.4
596,246 - GFF1741 0.16 -0.2
596,246 - GFF1741 0.16 -0.2
596,371 + GFF1741 0.27 +0.1
596,371 + GFF1741 0.27 +0.3
596,371 + GFF1741 0.27 +0.3
596,371 + GFF1741 0.27 -0.4
596,372 - GFF1741 0.27 -0.2

Or see this region's nucleotide sequence