Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1713

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1711 and GFF1712 are separated by 8 nucleotidesGFF1712 and GFF1713 are separated by 17 nucleotidesGFF1713 and GFF1714 are separated by 2 nucleotides GFF1711 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 565,860 to 567,878 GFF1711 GFF1712 - Probable transmembrane protein, at 567,887 to 568,507 GFF1712 GFF1713 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 568,525 to 569,316 GFF1713 GFF1714 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 569,319 to 570,455 GFF1714 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 567.700 kb on + strandat 567.700 kb on + strandat 567.701 kb on - strandat 567.701 kb on - strandat 567.701 kb on - strandat 567.701 kb on - strandat 567.785 kb on - strandat 567.785 kb on - strandat 567.785 kb on - strandat 567.888 kb on + strandat 567.889 kb on - strandat 567.889 kb on - strandat 567.889 kb on - strandat 567.889 kb on - strandat 568.422 kb on + strand, within GFF1712at 568.422 kb on + strand, within GFF1712at 568.422 kb on + strand, within GFF1712at 568.423 kb on - strand, within GFF1712at 568.423 kb on - strand, within GFF1712at 568.423 kb on - strand, within GFF1712at 568.423 kb on - strand, within GFF1712at 568.423 kb on - strand, within GFF1712at 568.832 kb on + strand, within GFF1713at 568.832 kb on + strand, within GFF1713at 568.832 kb on + strand, within GFF1713at 568.833 kb on - strand, within GFF1713at 568.833 kb on - strand, within GFF1713at 568.833 kb on - strand, within GFF1713at 568.833 kb on - strand, within GFF1713at 568.833 kb on - strand, within GFF1713at 568.833 kb on - strand, within GFF1713at 568.872 kb on - strand, within GFF1713at 568.872 kb on - strand, within GFF1713at 568.872 kb on - strand, within GFF1713at 568.872 kb on - strand, within GFF1713at 568.872 kb on - strand, within GFF1713at 568.985 kb on + strand, within GFF1713at 568.985 kb on + strand, within GFF1713at 568.985 kb on + strand, within GFF1713at 568.986 kb on - strand, within GFF1713at 568.986 kb on - strand, within GFF1713at 569.090 kb on + strand, within GFF1713at 569.324 kb on - strandat 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.554 kb on + strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.555 kb on - strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.662 kb on + strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.663 kb on - strand, within GFF1714at 569.755 kb on + strand, within GFF1714at 569.755 kb on + strand, within GFF1714at 569.755 kb on + strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.756 kb on - strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.950 kb on + strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 569.951 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714at 570.119 kb on - strand, within GFF1714

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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567,700 + -0.8
567,700 + -0.6
567,701 - -0.7
567,701 - -0.0
567,701 - +1.0
567,701 - -0.0
567,785 - -0.1
567,785 - -0.9
567,785 - +0.6
567,888 + -1.0
567,889 - -0.2
567,889 - -0.8
567,889 - +0.0
567,889 - +0.0
568,422 + GFF1712 0.86 -0.0
568,422 + GFF1712 0.86 +0.3
568,422 + GFF1712 0.86 +0.6
568,423 - GFF1712 0.86 +1.0
568,423 - GFF1712 0.86 +0.0
568,423 - GFF1712 0.86 -0.6
568,423 - GFF1712 0.86 +0.8
568,423 - GFF1712 0.86 -0.8
568,832 + GFF1713 0.39 +0.4
568,832 + GFF1713 0.39 +0.6
568,832 + GFF1713 0.39 +0.0
568,833 - GFF1713 0.39 +0.2
568,833 - GFF1713 0.39 +1.0
568,833 - GFF1713 0.39 +1.0
568,833 - GFF1713 0.39 +0.2
568,833 - GFF1713 0.39 -0.6
568,833 - GFF1713 0.39 +0.4
568,872 - GFF1713 0.44 +0.4
568,872 - GFF1713 0.44 +0.1
568,872 - GFF1713 0.44 +0.4
568,872 - GFF1713 0.44 -1.0
568,872 - GFF1713 0.44 +0.6
568,985 + GFF1713 0.58 +0.4
568,985 + GFF1713 0.58 -0.0
568,985 + GFF1713 0.58 -0.1
568,986 - GFF1713 0.58 -1.4
568,986 - GFF1713 0.58 +0.6
569,090 + GFF1713 0.71 +1.0
569,324 - +0.1
569,554 + GFF1714 0.21 +0.5
569,554 + GFF1714 0.21 -0.8
569,554 + GFF1714 0.21 +0.2
569,554 + GFF1714 0.21 -0.7
569,554 + GFF1714 0.21 -0.4
569,554 + GFF1714 0.21 +0.4
569,555 - GFF1714 0.21 +1.4
569,555 - GFF1714 0.21 -2.3
569,555 - GFF1714 0.21 +0.6
569,555 - GFF1714 0.21 -0.0
569,662 + GFF1714 0.30 +0.1
569,662 + GFF1714 0.30 -1.2
569,662 + GFF1714 0.30 +1.4
569,662 + GFF1714 0.30 +0.4
569,663 - GFF1714 0.30 -0.5
569,663 - GFF1714 0.30 +0.4
569,663 - GFF1714 0.30 +0.1
569,663 - GFF1714 0.30 -0.3
569,663 - GFF1714 0.30 -0.0
569,663 - GFF1714 0.30 +0.7
569,663 - GFF1714 0.30 -1.1
569,663 - GFF1714 0.30 +0.4
569,663 - GFF1714 0.30 -0.2
569,663 - GFF1714 0.30 -0.0
569,663 - GFF1714 0.30 -1.4
569,755 + GFF1714 0.38 -0.2
569,755 + GFF1714 0.38 +0.3
569,755 + GFF1714 0.38 +0.4
569,756 - GFF1714 0.38 +0.4
569,756 - GFF1714 0.38 +1.7
569,756 - GFF1714 0.38 +0.1
569,756 - GFF1714 0.38 +0.1
569,756 - GFF1714 0.38 +0.5
569,756 - GFF1714 0.38 +0.1
569,950 + GFF1714 0.55 -0.3
569,950 + GFF1714 0.55 +0.6
569,950 + GFF1714 0.55 -0.0
569,950 + GFF1714 0.55 -0.2
569,950 + GFF1714 0.55 +2.0
569,951 - GFF1714 0.56 -0.6
569,951 - GFF1714 0.56 +0.4
569,951 - GFF1714 0.56 -0.0
569,951 - GFF1714 0.56 +0.4
570,119 - GFF1714 0.70 +0.2
570,119 - GFF1714 0.70 +1.5
570,119 - GFF1714 0.70 -0.1
570,119 - GFF1714 0.70 -0.9
570,119 - GFF1714 0.70 -1.9

Or see this region's nucleotide sequence