Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1687 and GFF1688 are separated by 9 nucleotides GFF1688 and GFF1689 are separated by 4 nucleotides GFF1689 and GFF1690 are separated by 9 nucleotides GFF1690 and GFF1691 are separated by 145 nucleotides
GFF1687 - Phenylacetate-CoA oxygenase, PaaI subunit, at 538,583 to 539,425
GFF1687
GFF1688 - Phenylacetate-CoA oxygenase, PaaJ subunit, at 539,435 to 539,941
GFF1688
GFF1689 - Phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 539,946 to 541,052
GFF1689
GFF1690 - Outer membrane protein W precursor, at 541,062 to 541,667
GFF1690
GFF1691 - Rare lipoprotein A precursor, at 541,813 to 542,247
GFF1691
Position (kb) 539
540
541
542 Strain fitness (log2 ratio) -1
0
1
2 at 538.946 kb on + strand, within GFF1687 at 538.976 kb on + strand, within GFF1687 at 539.072 kb on + strand, within GFF1687 at 539.324 kb on + strand, within GFF1687 at 539.324 kb on + strand, within GFF1687 at 539.573 kb on + strand, within GFF1688 at 539.573 kb on + strand, within GFF1688 at 539.573 kb on + strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.723 kb on + strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.891 kb on + strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.924 kb on + strand at 539.924 kb on + strand at 539.925 kb on - strand at 539.937 kb on - strand at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.399 kb on + strand, within GFF1689 at 540.400 kb on - strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.463 kb on - strand, within GFF1689 at 541.184 kb on - strand, within GFF1690 at 541.184 kb on - strand, within GFF1690 at 541.294 kb on + strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.316 kb on - strand, within GFF1690 at 541.316 kb on - strand, within GFF1690 at 541.345 kb on + strand, within GFF1690 at 541.468 kb on + strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.715 kb on - strand at 541.794 kb on + strand at 541.795 kb on - strand at 541.795 kb on - strand at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 538,946 + GFF1687 0.43 +0.3 538,976 + GFF1687 0.47 +0.5 539,072 + GFF1687 0.58 +0.7 539,324 + GFF1687 0.88 +0.2 539,324 + GFF1687 0.88 -1.1 539,573 + GFF1688 0.27 -0.3 539,573 + GFF1688 0.27 +0.3 539,573 + GFF1688 0.27 +0.6 539,574 - GFF1688 0.27 -0.6 539,574 - GFF1688 0.27 -0.1 539,574 - GFF1688 0.27 +0.9 539,574 - GFF1688 0.27 +0.1 539,723 + GFF1688 0.57 -0.3 539,724 - GFF1688 0.57 +0.9 539,724 - GFF1688 0.57 +0.4 539,724 - GFF1688 0.57 -0.1 539,891 + +1.7 539,892 - +0.9 539,892 - +0.9 539,892 - +0.2 539,892 - -0.2 539,892 - +0.2 539,892 - -0.7 539,924 + +1.4 539,924 + -0.2 539,925 - +0.9 539,937 - -0.1 540,123 + GFF1689 0.16 +0.3 540,123 + GFF1689 0.16 -0.6 540,123 + GFF1689 0.16 -0.2 540,123 + GFF1689 0.16 +0.1 540,399 + GFF1689 0.41 -0.3 540,400 - GFF1689 0.41 -0.8 540,462 + GFF1689 0.47 -0.1 540,462 + GFF1689 0.47 +0.2 540,462 + GFF1689 0.47 -0.1 540,463 - GFF1689 0.47 -0.8 541,184 - GFF1690 0.20 +0.4 541,184 - GFF1690 0.20 +0.1 541,294 + GFF1690 0.38 +0.3 541,295 - GFF1690 0.38 +1.6 541,295 - GFF1690 0.38 -0.4 541,295 - GFF1690 0.38 -1.4 541,295 - GFF1690 0.38 +0.5 541,295 - GFF1690 0.38 -1.6 541,316 - GFF1690 0.42 -0.0 541,316 - GFF1690 0.42 -0.6 541,345 + GFF1690 0.47 -0.5 541,468 + GFF1690 0.67 +0.9 541,469 - GFF1690 0.67 +0.5 541,469 - GFF1690 0.67 +1.9 541,469 - GFF1690 0.67 +0.1 541,469 - GFF1690 0.67 +0.0 541,715 - +1.4 541,794 + -0.2 541,795 - +0.4 541,795 - +0.3 542,027 + GFF1691 0.49 -0.1 542,027 + GFF1691 0.49 -1.5 542,027 + GFF1691 0.49 -1.2 542,027 + GFF1691 0.49 +0.3 542,027 + GFF1691 0.49 -0.2 542,027 + GFF1691 0.49 +0.5 542,027 + GFF1691 0.49 -0.1 542,028 - GFF1691 0.49 -0.9 542,028 - GFF1691 0.49 -0.5 542,028 - GFF1691 0.49 -0.4 542,028 - GFF1691 0.49 +0.6 542,028 - GFF1691 0.49 -0.3
Or see this region's nucleotide sequence