Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1575 and GFF1576 are separated by 12 nucleotides GFF1576 and GFF1577 are separated by 4 nucleotides GFF1577 and GFF1578 are separated by 3 nucleotides GFF1578 and GFF1579 are separated by 17 nucleotides
GFF1575 - Nudix-related transcriptional regulator NrtR, at 431,039 to 431,689
GFF1575
GFF1576 - Glutaminase (EC 3.5.1.2), at 431,702 to 432,613
GFF1576
GFF1577 - YciL protein, at 432,618 to 432,917
GFF1577
GFF1578 - Methylisocitrate lyase (EC 4.1.3.30), at 432,921 to 433,796
GFF1578
GFF1579 - Tricarboxylate transport protein TctC, at 433,814 to 434,905
GFF1579
Position (kb) 432
433 Strain fitness (log2 ratio) -1
0
1
2 at 431.780 kb on + strand at 431.780 kb on + strand at 431.781 kb on - strand at 432.261 kb on - strand, within GFF1576 at 432.261 kb on - strand, within GFF1576 at 432.416 kb on + strand, within GFF1576 at 432.416 kb on + strand, within GFF1576 at 432.838 kb on + strand, within GFF1577 at 432.839 kb on - strand, within GFF1577 at 432.910 kb on + strand at 432.910 kb on + strand at 432.910 kb on + strand at 432.911 kb on - strand at 432.911 kb on - strand at 432.931 kb on + strand at 432.979 kb on + strand at 432.980 kb on + strand at 432.980 kb on - strand at 433.087 kb on + strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.483 kb on + strand, within GFF1578 at 433.666 kb on + strand, within GFF1578 at 433.667 kb on - strand, within GFF1578
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 431,780 + +0.7 431,780 + -0.4 431,781 - -0.7 432,261 - GFF1576 0.61 +0.4 432,261 - GFF1576 0.61 -0.6 432,416 + GFF1576 0.78 +0.1 432,416 + GFF1576 0.78 +1.9 432,838 + GFF1577 0.73 +0.4 432,839 - GFF1577 0.74 +0.7 432,910 + -0.8 432,910 + +1.1 432,910 + -0.3 432,911 - +0.5 432,911 - +1.5 432,931 + -0.5 432,979 + +0.1 432,980 + +0.3 432,980 - +0.2 433,087 + GFF1578 0.19 -0.5 433,088 - GFF1578 0.19 -0.2 433,088 - GFF1578 0.19 +0.4 433,088 - GFF1578 0.19 -0.9 433,088 - GFF1578 0.19 +0.1 433,483 + GFF1578 0.64 +0.2 433,666 + GFF1578 0.85 -0.4 433,667 - GFF1578 0.85 +0.9
Or see this region's nucleotide sequence