Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1508 and GFF1509 are separated by 191 nucleotides GFF1509 and GFF1510 are separated by 26 nucleotides GFF1510 and GFF1511 are separated by 3 nucleotides GFF1511 and GFF1512 are separated by 69 nucleotides GFF1512 and GFF1513 are separated by 206 nucleotides
GFF1508 - sensory box histidine kinase, at 358,199 to 359,617
GFF1508
GFF1509 - ATP synthase F0 sector subunit c, at 359,809 to 360,048
GFF1509
GFF1510 - Oxidoreductase (EC 1.1.1.-), at 360,075 to 360,596
GFF1510
GFF1511 - Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-), at 360,600 to 361,637
GFF1511
GFF1512 - Transcriptional regulator, MarR family, at 361,707 to 362,120
GFF1512
GFF1513 - hypothetical protein, at 362,327 to 362,989
GFF1513
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1 at 359.689 kb on + strand at 359.689 kb on + strand at 359.689 kb on + strand at 359.690 kb on - strand at 359.690 kb on - strand at 359.690 kb on - strand at 359.690 kb on - strand at 359.690 kb on - strand at 360.303 kb on + strand, within GFF1510 at 360.304 kb on - strand, within GFF1510 at 360.304 kb on - strand, within GFF1510 at 360.304 kb on - strand, within GFF1510 at 360.574 kb on - strand at 360.832 kb on + strand, within GFF1511 at 360.833 kb on - strand, within GFF1511 at 360.883 kb on + strand, within GFF1511 at 360.883 kb on + strand, within GFF1511 at 360.883 kb on + strand, within GFF1511 at 360.884 kb on - strand, within GFF1511 at 360.884 kb on - strand, within GFF1511 at 360.910 kb on + strand, within GFF1511 at 361.159 kb on + strand, within GFF1511 at 361.159 kb on + strand, within GFF1511 at 361.159 kb on + strand, within GFF1511 at 361.159 kb on + strand, within GFF1511 at 361.159 kb on + strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.160 kb on - strand, within GFF1511 at 361.237 kb on + strand, within GFF1511 at 361.331 kb on - strand, within GFF1511 at 361.612 kb on + strand at 361.656 kb on + strand at 362.279 kb on + strand at 362.279 kb on + strand at 362.291 kb on + strand at 362.292 kb on - strand at 362.417 kb on + strand, within GFF1513 at 362.418 kb on - strand, within GFF1513 at 362.418 kb on - strand, within GFF1513 at 362.418 kb on - strand, within GFF1513 at 362.418 kb on - strand, within GFF1513 at 362.624 kb on + strand, within GFF1513 at 362.624 kb on + strand, within GFF1513 at 362.625 kb on - strand, within GFF1513
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 359,689 + +0.9 359,689 + +0.1 359,689 + -0.1 359,690 - -0.4 359,690 - +0.3 359,690 - -1.2 359,690 - -0.1 359,690 - +0.0 360,303 + GFF1510 0.44 -0.9 360,304 - GFF1510 0.44 +0.2 360,304 - GFF1510 0.44 +0.3 360,304 - GFF1510 0.44 +0.4 360,574 - +0.0 360,832 + GFF1511 0.22 -1.2 360,833 - GFF1511 0.22 -0.8 360,883 + GFF1511 0.27 -0.3 360,883 + GFF1511 0.27 +0.1 360,883 + GFF1511 0.27 +0.1 360,884 - GFF1511 0.27 +0.3 360,884 - GFF1511 0.27 -0.3 360,910 + GFF1511 0.30 +0.3 361,159 + GFF1511 0.54 +0.4 361,159 + GFF1511 0.54 +0.9 361,159 + GFF1511 0.54 -0.7 361,159 + GFF1511 0.54 +0.2 361,159 + GFF1511 0.54 +0.2 361,160 - GFF1511 0.54 -0.0 361,160 - GFF1511 0.54 -0.7 361,160 - GFF1511 0.54 +0.1 361,160 - GFF1511 0.54 -0.1 361,160 - GFF1511 0.54 +0.3 361,160 - GFF1511 0.54 -0.2 361,160 - GFF1511 0.54 +0.6 361,237 + GFF1511 0.61 +0.6 361,331 - GFF1511 0.70 +0.3 361,612 + +0.0 361,656 + -1.1 362,279 + -0.5 362,279 + +0.9 362,291 + -0.5 362,292 - -0.2 362,417 + GFF1513 0.14 +0.3 362,418 - GFF1513 0.14 -0.1 362,418 - GFF1513 0.14 -0.2 362,418 - GFF1513 0.14 +0.2 362,418 - GFF1513 0.14 -0.1 362,624 + GFF1513 0.45 +0.3 362,624 + GFF1513 0.45 -0.5 362,625 - GFF1513 0.45 +0.3
Or see this region's nucleotide sequence