Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1483 and GFF1484 overlap by 32 nucleotides GFF1484 and GFF1485 overlap by 15 nucleotides GFF1485 and GFF1486 are separated by 4 nucleotides GFF1486 and GFF1487 are separated by 97 nucleotides GFF1487 and GFF1488 are separated by 16 nucleotides GFF1488 and GFF1489 overlap by 4 nucleotides
GFF1483 - Putative diheme cytochrome c-553, at 332,333 to 333,235
GFF1483
GFF1484 - hypothetical protein, at 333,204 to 333,521
GFF1484
GFF1485 - Transcriptional regulator, ArsR family, at 333,507 to 334,199
GFF1485
GFF1486 - hypothetical protein, at 334,204 to 335,289
GFF1486
GFF1487 - Universal stress family protein, at 335,387 to 335,833
GFF1487
GFF1488 - Two-component system response regulator, at 335,850 to 336,281
GFF1488
GFF1489 - Sensory box histidine kinase, at 336,278 to 338,929
GFF1489
Position (kb) 334
335
336 Strain fitness (log2 ratio) -1
0
1
2 at 333.341 kb on + strand, within GFF1484 at 333.341 kb on + strand, within GFF1484 at 333.585 kb on + strand, within GFF1485 at 333.726 kb on + strand, within GFF1485 at 333.726 kb on + strand, within GFF1485 at 333.853 kb on - strand, within GFF1485 at 333.927 kb on + strand, within GFF1485 at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.269 kb on - strand at 334.391 kb on + strand, within GFF1486 at 334.392 kb on - strand, within GFF1486 at 334.394 kb on + strand, within GFF1486 at 334.394 kb on + strand, within GFF1486 at 334.394 kb on + strand, within GFF1486 at 334.395 kb on - strand, within GFF1486 at 334.395 kb on - strand, within GFF1486 at 334.445 kb on + strand, within GFF1486 at 334.446 kb on - strand, within GFF1486 at 334.478 kb on + strand, within GFF1486 at 334.479 kb on - strand, within GFF1486 at 334.523 kb on + strand, within GFF1486 at 334.523 kb on + strand, within GFF1486 at 334.565 kb on + strand, within GFF1486 at 334.566 kb on - strand, within GFF1486 at 334.643 kb on + strand, within GFF1486 at 334.643 kb on + strand, within GFF1486 at 334.644 kb on - strand, within GFF1486 at 334.644 kb on - strand, within GFF1486 at 334.981 kb on + strand, within GFF1486 at 334.981 kb on + strand, within GFF1486 at 334.982 kb on - strand, within GFF1486 at 335.700 kb on + strand, within GFF1487 at 335.700 kb on + strand, within GFF1487 at 335.700 kb on + strand, within GFF1487 at 335.701 kb on - strand, within GFF1487 at 335.854 kb on + strand at 335.854 kb on + strand at 335.882 kb on - strand at 335.882 kb on - strand at 335.882 kb on - strand at 335.942 kb on - strand, within GFF1488 at 335.942 kb on - strand, within GFF1488 at 335.962 kb on + strand, within GFF1488 at 336.003 kb on + strand, within GFF1488 at 336.003 kb on + strand, within GFF1488 at 336.003 kb on + strand, within GFF1488
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 333,341 + GFF1484 0.43 -0.6 333,341 + GFF1484 0.43 +0.4 333,585 + GFF1485 0.11 -0.3 333,726 + GFF1485 0.32 +0.3 333,726 + GFF1485 0.32 -0.4 333,853 - GFF1485 0.50 -0.8 333,927 + GFF1485 0.61 -0.6 334,269 - +0.3 334,269 - +1.9 334,269 - +0.5 334,269 - -0.1 334,269 - +0.2 334,269 - -0.4 334,391 + GFF1486 0.17 +1.4 334,392 - GFF1486 0.17 +0.1 334,394 + GFF1486 0.17 -0.1 334,394 + GFF1486 0.17 +1.1 334,394 + GFF1486 0.17 +0.3 334,395 - GFF1486 0.18 +0.7 334,395 - GFF1486 0.18 +0.4 334,445 + GFF1486 0.22 +0.3 334,446 - GFF1486 0.22 +0.4 334,478 + GFF1486 0.25 +1.0 334,479 - GFF1486 0.25 +0.8 334,523 + GFF1486 0.29 +0.6 334,523 + GFF1486 0.29 +0.7 334,565 + GFF1486 0.33 +0.2 334,566 - GFF1486 0.33 +0.1 334,643 + GFF1486 0.40 +0.5 334,643 + GFF1486 0.40 +0.2 334,644 - GFF1486 0.41 +0.3 334,644 - GFF1486 0.41 +1.6 334,981 + GFF1486 0.72 +0.7 334,981 + GFF1486 0.72 +0.4 334,982 - GFF1486 0.72 +0.3 335,700 + GFF1487 0.70 +0.6 335,700 + GFF1487 0.70 +0.2 335,700 + GFF1487 0.70 +0.2 335,701 - GFF1487 0.70 +0.9 335,854 + -1.1 335,854 + -0.2 335,882 - -1.1 335,882 - -0.1 335,882 - -0.2 335,942 - GFF1488 0.21 +0.4 335,942 - GFF1488 0.21 -0.3 335,962 + GFF1488 0.26 +0.3 336,003 + GFF1488 0.35 +0.7 336,003 + GFF1488 0.35 +2.2 336,003 + GFF1488 0.35 +0.7
Or see this region's nucleotide sequence