Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1447 and GFF1448 are separated by 16 nucleotides GFF1448 and GFF1449 are separated by 125 nucleotides GFF1449 and GFF1450 are separated by 184 nucleotides GFF1450 and GFF1451 are separated by 36 nucleotides
GFF1447 - Flagellar biosynthesis protein FliS, at 303,600 to 304,010
GFF1447
GFF1448 - Flagellar biosynthesis protein FliT, at 304,027 to 304,314
GFF1448
GFF1449 - Flagellar hook-basal body complex protein FliE, at 304,440 to 304,754
GFF1449
GFF1450 - Flagellar M-ring protein FliF, at 304,939 to 306,639
GFF1450
GFF1451 - Flagellar motor switch protein FliG, at 306,676 to 307,674
GFF1451
Position (kb) 304
305
306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 304.034 kb on - strand at 304.034 kb on - strand at 304.036 kb on + strand at 304.036 kb on + strand at 304.036 kb on + strand at 304.036 kb on + strand at 304.037 kb on - strand at 304.037 kb on - strand at 304.037 kb on - strand at 304.349 kb on - strand at 304.441 kb on + strand at 304.442 kb on - strand at 304.776 kb on - strand at 304.776 kb on - strand at 304.776 kb on - strand at 304.776 kb on - strand at 304.792 kb on - strand at 304.822 kb on + strand at 304.823 kb on - strand at 304.823 kb on - strand at 304.823 kb on - strand at 304.852 kb on + strand at 304.852 kb on + strand at 304.852 kb on + strand at 304.852 kb on + strand at 304.852 kb on + strand at 304.852 kb on + strand at 304.853 kb on - strand at 304.853 kb on - strand at 304.853 kb on - strand at 304.876 kb on + strand at 304.896 kb on + strand at 304.897 kb on - strand at 304.897 kb on - strand at 304.920 kb on + strand at 304.920 kb on + strand at 305.128 kb on + strand, within GFF1450 at 305.195 kb on - strand, within GFF1450 at 305.195 kb on - strand, within GFF1450 at 305.678 kb on - strand, within GFF1450 at 305.678 kb on - strand, within GFF1450 at 306.043 kb on + strand, within GFF1450 at 306.043 kb on + strand, within GFF1450 at 306.044 kb on - strand, within GFF1450 at 306.898 kb on + strand, within GFF1451 at 306.898 kb on + strand, within GFF1451 at 306.899 kb on - strand, within GFF1451 at 306.899 kb on - strand, within GFF1451 at 306.899 kb on - strand, within GFF1451 at 307.208 kb on - strand, within GFF1451 at 307.208 kb on - strand, within GFF1451 at 307.208 kb on - strand, within GFF1451
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 304,034 - -0.1 304,034 - -1.9 304,036 + -0.7 304,036 + +0.2 304,036 + +0.5 304,036 + -0.1 304,037 - -0.4 304,037 - -0.5 304,037 - +0.1 304,349 - +0.8 304,441 + -0.7 304,442 - -0.4 304,776 - +1.4 304,776 - +0.1 304,776 - +0.4 304,776 - -0.6 304,792 - +0.9 304,822 + +0.5 304,823 - +0.3 304,823 - +1.1 304,823 - -0.1 304,852 + -0.0 304,852 + +0.0 304,852 + +0.3 304,852 + +0.3 304,852 + +0.9 304,852 + -0.6 304,853 - +0.9 304,853 - +0.4 304,853 - +0.8 304,876 + +1.1 304,896 + +0.4 304,897 - +0.5 304,897 - +0.0 304,920 + -0.1 304,920 + -1.6 305,128 + GFF1450 0.11 -0.3 305,195 - GFF1450 0.15 +0.6 305,195 - GFF1450 0.15 +0.2 305,678 - GFF1450 0.43 +0.1 305,678 - GFF1450 0.43 -0.1 306,043 + GFF1450 0.65 +1.1 306,043 + GFF1450 0.65 -1.4 306,044 - GFF1450 0.65 +0.6 306,898 + GFF1451 0.22 -0.2 306,898 + GFF1451 0.22 +0.9 306,899 - GFF1451 0.22 -0.2 306,899 - GFF1451 0.22 -0.4 306,899 - GFF1451 0.22 +0.6 307,208 - GFF1451 0.53 -0.3 307,208 - GFF1451 0.53 +0.7 307,208 - GFF1451 0.53 +0.7
Or see this region's nucleotide sequence