Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1414 and GFF1415 are separated by 17 nucleotides GFF1415 and GFF1416 are separated by 207 nucleotides GFF1416 and GFF1417 are separated by 263 nucleotides GFF1417 and GFF1418 are separated by 77 nucleotides
GFF1414 - Flagellar basal-body rod protein FlgC, at 275,732 to 276,136
GFF1414
GFF1415 - Flagellar basal-body rod protein FlgB, at 276,154 to 276,567
GFF1415
GFF1416 - Flagellar basal-body P-ring formation protein FlgA, at 276,775 to 277,506
GFF1416
GFF1417 - hypothetical protein, at 277,770 to 277,958
GFF1417
GFF1418 - hypothetical protein, at 278,036 to 278,362
GFF1418
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.803 kb on - strand, within GFF1414 at 276.012 kb on + strand, within GFF1414 at 276.012 kb on + strand, within GFF1414 at 276.012 kb on + strand, within GFF1414 at 276.013 kb on - strand, within GFF1414 at 276.013 kb on - strand, within GFF1414 at 276.221 kb on + strand, within GFF1415 at 276.308 kb on + strand, within GFF1415 at 276.309 kb on - strand, within GFF1415 at 276.309 kb on - strand, within GFF1415 at 276.439 kb on + strand, within GFF1415 at 276.455 kb on + strand, within GFF1415 at 276.455 kb on + strand, within GFF1415 at 276.455 kb on + strand, within GFF1415 at 276.642 kb on + strand at 276.727 kb on + strand at 276.727 kb on + strand at 276.728 kb on - strand at 276.728 kb on - strand at 276.728 kb on - strand at 277.102 kb on + strand, within GFF1416 at 277.102 kb on + strand, within GFF1416 at 277.102 kb on + strand, within GFF1416 at 277.102 kb on + strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.504 kb on + strand at 277.504 kb on + strand at 277.504 kb on + strand at 277.505 kb on - strand at 277.505 kb on - strand at 277.571 kb on + strand at 277.572 kb on - strand at 277.581 kb on - strand at 277.595 kb on + strand at 277.595 kb on + strand at 277.595 kb on + strand at 277.595 kb on + strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.618 kb on + strand at 277.619 kb on - strand at 277.619 kb on - strand at 277.619 kb on - strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.666 kb on - strand at 277.666 kb on - strand at 277.666 kb on - strand at 277.666 kb on - strand at 277.667 kb on + strand at 277.667 kb on + strand at 277.667 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.670 kb on + strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 278.300 kb on + strand, within GFF1418 at 278.412 kb on + strand at 278.413 kb on - strand at 278.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 275,803 - GFF1414 0.18 -0.1 276,012 + GFF1414 0.69 +0.8 276,012 + GFF1414 0.69 +0.9 276,012 + GFF1414 0.69 -0.4 276,013 - GFF1414 0.69 +0.1 276,013 - GFF1414 0.69 +1.8 276,221 + GFF1415 0.16 -0.6 276,308 + GFF1415 0.37 +0.3 276,309 - GFF1415 0.37 +0.2 276,309 - GFF1415 0.37 -0.2 276,439 + GFF1415 0.69 -0.1 276,455 + GFF1415 0.73 +0.7 276,455 + GFF1415 0.73 +0.2 276,455 + GFF1415 0.73 +1.8 276,642 + -0.1 276,727 + +0.1 276,727 + +1.4 276,728 - -0.1 276,728 - -0.1 276,728 - +0.3 277,102 + GFF1416 0.45 +0.7 277,102 + GFF1416 0.45 +0.8 277,102 + GFF1416 0.45 +0.6 277,102 + GFF1416 0.45 +0.9 277,103 - GFF1416 0.45 +0.9 277,103 - GFF1416 0.45 +0.4 277,103 - GFF1416 0.45 +0.7 277,103 - GFF1416 0.45 +0.3 277,103 - GFF1416 0.45 +0.3 277,103 - GFF1416 0.45 -0.1 277,103 - GFF1416 0.45 +0.9 277,504 + -0.5 277,504 + +0.5 277,504 + +0.5 277,505 - +1.2 277,505 - -0.3 277,571 + -1.1 277,572 - -0.6 277,581 - -0.8 277,595 + +0.1 277,595 + +0.7 277,595 + +0.2 277,595 + -0.4 277,596 - +0.5 277,596 - +1.9 277,596 - -0.2 277,596 - -0.5 277,596 - -0.7 277,618 + -0.1 277,619 - -1.4 277,619 - -0.8 277,619 - -1.4 277,665 + -0.3 277,665 + -2.1 277,665 + -1.5 277,665 + -1.5 277,665 + -1.9 277,665 + -1.6 277,665 + -0.1 277,666 - -1.6 277,666 - -1.2 277,666 - -2.0 277,666 - -1.1 277,667 + -1.7 277,667 + -2.5 277,667 + -0.6 277,669 + -0.9 277,669 + -0.9 277,669 + -0.1 277,669 + +0.9 277,669 + -1.6 277,669 + -1.9 277,669 + +0.4 277,669 + -2.4 277,669 + -1.7 277,669 + -1.9 277,669 + +0.5 277,669 + -0.7 277,669 + -0.9 277,669 + -0.3 277,669 + -0.8 277,670 + -2.1 277,670 - +0.4 277,670 - -1.2 277,670 - -2.8 277,670 - -0.9 277,670 - -2.1 277,670 - -0.4 277,670 - -0.9 277,670 - -0.5 277,670 - -0.4 278,300 + GFF1418 0.81 +0.2 278,412 + -0.1 278,413 - +0.3 278,486 + +0.4
Or see this region's nucleotide sequence