Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1344 and GFF1345 are separated by 77 nucleotides GFF1345 and GFF1346 are separated by 10 nucleotides
GFF1344 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 196,852 to 198,045
GFF1344
GFF1345 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 198,123 to 199,001
GFF1345
GFF1346 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 199,012 to 200,001
GFF1346
Position (kb) 198
199
200 Strain fitness (log2 ratio) -1
0
1
2
3 at 197.209 kb on + strand, within GFF1344 at 197.209 kb on + strand, within GFF1344 at 197.210 kb on - strand, within GFF1344 at 197.275 kb on + strand, within GFF1344 at 197.275 kb on + strand, within GFF1344 at 197.275 kb on + strand, within GFF1344 at 197.276 kb on - strand, within GFF1344 at 197.281 kb on + strand, within GFF1344 at 197.281 kb on + strand, within GFF1344 at 197.281 kb on + strand, within GFF1344 at 197.365 kb on + strand, within GFF1344 at 197.659 kb on + strand, within GFF1344 at 197.659 kb on + strand, within GFF1344 at 197.659 kb on + strand, within GFF1344 at 197.660 kb on - strand, within GFF1344 at 197.660 kb on - strand, within GFF1344 at 197.660 kb on - strand, within GFF1344 at 197.767 kb on + strand, within GFF1344 at 197.768 kb on - strand, within GFF1344 at 197.768 kb on - strand, within GFF1344 at 197.785 kb on + strand, within GFF1344 at 197.785 kb on + strand, within GFF1344 at 197.786 kb on - strand, within GFF1344 at 197.917 kb on + strand, within GFF1344 at 197.917 kb on + strand, within GFF1344 at 197.918 kb on - strand, within GFF1344 at 197.918 kb on - strand, within GFF1344 at 197.918 kb on - strand, within GFF1344 at 197.918 kb on - strand, within GFF1344 at 197.918 kb on - strand, within GFF1344 at 197.965 kb on + strand at 197.965 kb on + strand at 197.966 kb on - strand at 197.966 kb on - strand at 198.140 kb on - strand at 198.140 kb on - strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.309 kb on + strand, within GFF1345 at 198.309 kb on + strand, within GFF1345 at 198.423 kb on + strand, within GFF1345 at 198.424 kb on - strand, within GFF1345 at 198.424 kb on - strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.484 kb on - strand, within GFF1345 at 198.504 kb on + strand, within GFF1345 at 198.504 kb on + strand, within GFF1345 at 198.609 kb on + strand, within GFF1345 at 198.610 kb on - strand, within GFF1345 at 198.610 kb on - strand, within GFF1345 at 198.610 kb on - strand, within GFF1345 at 198.639 kb on + strand, within GFF1345 at 198.639 kb on + strand, within GFF1345 at 198.639 kb on + strand, within GFF1345 at 198.717 kb on + strand, within GFF1345 at 198.717 kb on + strand, within GFF1345 at 198.717 kb on + strand, within GFF1345 at 198.718 kb on - strand, within GFF1345 at 199.087 kb on + strand at 199.088 kb on - strand at 199.208 kb on - strand, within GFF1346 at 199.208 kb on - strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.334 kb on - strand, within GFF1346 at 199.334 kb on - strand, within GFF1346 at 199.479 kb on - strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.481 kb on - strand, within GFF1346 at 199.481 kb on - strand, within GFF1346 at 199.481 kb on - strand, within GFF1346 at 199.483 kb on + strand, within GFF1346 at 199.483 kb on + strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 197,209 + GFF1344 0.30 -0.6 197,209 + GFF1344 0.30 -0.2 197,210 - GFF1344 0.30 -0.1 197,275 + GFF1344 0.35 +0.1 197,275 + GFF1344 0.35 +0.2 197,275 + GFF1344 0.35 -0.4 197,276 - GFF1344 0.36 +0.3 197,281 + GFF1344 0.36 +0.7 197,281 + GFF1344 0.36 +0.0 197,281 + GFF1344 0.36 -1.4 197,365 + GFF1344 0.43 -0.4 197,659 + GFF1344 0.68 +0.3 197,659 + GFF1344 0.68 -0.3 197,659 + GFF1344 0.68 +0.2 197,660 - GFF1344 0.68 -0.7 197,660 - GFF1344 0.68 -1.1 197,660 - GFF1344 0.68 +0.3 197,767 + GFF1344 0.77 +0.0 197,768 - GFF1344 0.77 +0.2 197,768 - GFF1344 0.77 -0.7 197,785 + GFF1344 0.78 +0.5 197,785 + GFF1344 0.78 +0.1 197,786 - GFF1344 0.78 -0.0 197,917 + GFF1344 0.89 -0.4 197,917 + GFF1344 0.89 +0.2 197,918 - GFF1344 0.89 +0.3 197,918 - GFF1344 0.89 -0.9 197,918 - GFF1344 0.89 +0.1 197,918 - GFF1344 0.89 -0.7 197,918 - GFF1344 0.89 +0.4 197,965 + -0.3 197,965 + -0.7 197,966 - +0.2 197,966 - +0.3 198,140 - +0.6 198,140 - +0.5 198,195 + +0.6 198,195 + -0.2 198,195 + -0.2 198,195 + +0.3 198,195 + +0.2 198,309 + GFF1345 0.21 +0.2 198,309 + GFF1345 0.21 +0.6 198,423 + GFF1345 0.34 -0.3 198,424 - GFF1345 0.34 -0.0 198,424 - GFF1345 0.34 +0.4 198,483 + GFF1345 0.41 -0.5 198,483 + GFF1345 0.41 +0.6 198,483 + GFF1345 0.41 -1.1 198,483 + GFF1345 0.41 +0.6 198,483 + GFF1345 0.41 -0.7 198,484 - GFF1345 0.41 +0.2 198,504 + GFF1345 0.43 -0.2 198,504 + GFF1345 0.43 -0.2 198,609 + GFF1345 0.55 +0.5 198,610 - GFF1345 0.55 +0.2 198,610 - GFF1345 0.55 +1.8 198,610 - GFF1345 0.55 +0.1 198,639 + GFF1345 0.59 +0.4 198,639 + GFF1345 0.59 +0.9 198,639 + GFF1345 0.59 -0.9 198,717 + GFF1345 0.68 +0.2 198,717 + GFF1345 0.68 +0.4 198,717 + GFF1345 0.68 +0.7 198,718 - GFF1345 0.68 -0.1 199,087 + +0.7 199,088 - +0.5 199,208 - GFF1346 0.20 +2.9 199,208 - GFF1346 0.20 +0.2 199,333 + GFF1346 0.32 -0.1 199,333 + GFF1346 0.32 -0.6 199,333 + GFF1346 0.32 +0.2 199,333 + GFF1346 0.32 +1.8 199,333 + GFF1346 0.32 -0.1 199,333 + GFF1346 0.32 -0.2 199,333 + GFF1346 0.32 -1.0 199,334 - GFF1346 0.33 -0.1 199,334 - GFF1346 0.33 +0.4 199,479 - GFF1346 0.47 -0.2 199,480 + GFF1346 0.47 -0.1 199,480 + GFF1346 0.47 +0.5 199,480 + GFF1346 0.47 +0.8 199,480 + GFF1346 0.47 -0.3 199,481 - GFF1346 0.47 -0.1 199,481 - GFF1346 0.47 +0.0 199,481 - GFF1346 0.47 -0.1 199,483 + GFF1346 0.48 +0.2 199,483 + GFF1346 0.48 -1.2 199,484 - GFF1346 0.48 -0.6 199,484 - GFF1346 0.48 +0.1 199,484 - GFF1346 0.48 -0.2 199,484 - GFF1346 0.48 -0.6 199,484 - GFF1346 0.48 +0.1 199,484 - GFF1346 0.48 -0.2 199,484 - GFF1346 0.48 -0.9
Or see this region's nucleotide sequence