Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1336

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1334 and GFF1335 are separated by 95 nucleotidesGFF1335 and GFF1336 are separated by 18 nucleotidesGFF1336 and GFF1337 overlap by 4 nucleotides GFF1334 - Type IV pilus biogenesis protein PilP, at 187,623 to 188,078 GFF1334 GFF1335 - Type IV pilus biogenesis protein PilO, at 188,174 to 188,854 GFF1335 GFF1336 - Type IV pilus biogenesis protein PilN, at 188,873 to 189,490 GFF1336 GFF1337 - Type IV pilus biogenesis protein PilM, at 189,487 to 190,524 GFF1337 Position (kb) 188 189 190Strain fitness (log2 ratio) -1 0 1 2at 188.002 kb on + strand, within GFF1334at 188.002 kb on + strand, within GFF1334at 188.111 kb on + strandat 188.112 kb on - strandat 188.112 kb on - strandat 188.112 kb on - strandat 188.112 kb on - strandat 188.112 kb on - strandat 188.112 kb on - strandat 188.112 kb on - strandat 188.293 kb on + strand, within GFF1335at 188.294 kb on - strand, within GFF1335at 188.294 kb on - strand, within GFF1335at 188.299 kb on + strand, within GFF1335at 188.299 kb on + strand, within GFF1335at 188.300 kb on - strand, within GFF1335at 188.300 kb on - strand, within GFF1335at 188.300 kb on - strand, within GFF1335at 188.373 kb on + strand, within GFF1335at 188.373 kb on + strand, within GFF1335at 188.374 kb on - strand, within GFF1335at 188.374 kb on - strand, within GFF1335at 188.374 kb on - strand, within GFF1335at 188.374 kb on - strand, within GFF1335at 188.412 kb on + strand, within GFF1335at 188.415 kb on + strand, within GFF1335at 188.416 kb on - strand, within GFF1335at 188.416 kb on - strand, within GFF1335at 188.416 kb on - strand, within GFF1335at 188.550 kb on + strand, within GFF1335at 188.550 kb on + strand, within GFF1335at 188.550 kb on + strand, within GFF1335at 188.551 kb on - strand, within GFF1335at 188.551 kb on - strand, within GFF1335at 188.551 kb on - strand, within GFF1335at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.151 kb on - strand, within GFF1336at 189.151 kb on - strand, within GFF1336at 189.151 kb on - strand, within GFF1336at 189.154 kb on + strand, within GFF1336at 189.155 kb on - strand, within GFF1336at 189.155 kb on - strand, within GFF1336at 189.363 kb on + strand, within GFF1336at 189.494 kb on + strandat 189.494 kb on + strandat 189.494 kb on + strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.530 kb on + strandat 189.530 kb on + strandat 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.702 kb on - strand, within GFF1337at 189.702 kb on - strand, within GFF1337at 189.702 kb on - strand, within GFF1337at 189.788 kb on + strand, within GFF1337at 189.788 kb on + strand, within GFF1337at 189.789 kb on - strand, within GFF1337at 189.849 kb on - strand, within GFF1337at 189.905 kb on + strand, within GFF1337at 189.906 kb on - strand, within GFF1337at 189.906 kb on - strand, within GFF1337at 189.906 kb on - strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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188,002 + GFF1334 0.83 +1.2
188,002 + GFF1334 0.83 +0.9
188,111 + +0.7
188,112 - +1.0
188,112 - +0.8
188,112 - +0.7
188,112 - +0.8
188,112 - -0.2
188,112 - +1.4
188,112 - +0.7
188,293 + GFF1335 0.17 +1.2
188,294 - GFF1335 0.18 +0.7
188,294 - GFF1335 0.18 +0.9
188,299 + GFF1335 0.18 +1.3
188,299 + GFF1335 0.18 -0.7
188,300 - GFF1335 0.19 +0.9
188,300 - GFF1335 0.19 +0.9
188,300 - GFF1335 0.19 +0.8
188,373 + GFF1335 0.29 +0.5
188,373 + GFF1335 0.29 +1.5
188,374 - GFF1335 0.29 +0.9
188,374 - GFF1335 0.29 +0.9
188,374 - GFF1335 0.29 +0.8
188,374 - GFF1335 0.29 -0.9
188,412 + GFF1335 0.35 +0.6
188,415 + GFF1335 0.35 +0.7
188,416 - GFF1335 0.36 +1.1
188,416 - GFF1335 0.36 -0.5
188,416 - GFF1335 0.36 +0.8
188,550 + GFF1335 0.55 +0.5
188,550 + GFF1335 0.55 +0.9
188,550 + GFF1335 0.55 +1.9
188,551 - GFF1335 0.55 +1.4
188,551 - GFF1335 0.55 +1.2
188,551 - GFF1335 0.55 +1.1
189,150 + GFF1336 0.45 +0.5
189,150 + GFF1336 0.45 +0.5
189,150 + GFF1336 0.45 -0.1
189,150 + GFF1336 0.45 +0.4
189,150 + GFF1336 0.45 +1.3
189,150 + GFF1336 0.45 +0.3
189,150 + GFF1336 0.45 -0.1
189,150 + GFF1336 0.45 +0.8
189,151 - GFF1336 0.45 +1.6
189,151 - GFF1336 0.45 +0.0
189,151 - GFF1336 0.45 +0.3
189,154 + GFF1336 0.45 +0.4
189,155 - GFF1336 0.46 +0.7
189,155 - GFF1336 0.46 +0.2
189,363 + GFF1336 0.79 +1.4
189,494 + +1.3
189,494 + +0.5
189,494 + +1.0
189,495 - +1.8
189,495 - +0.5
189,495 - +0.4
189,495 - +0.6
189,495 - +1.0
189,530 + +0.9
189,530 + +0.3
189,701 + GFF1337 0.21 +0.5
189,701 + GFF1337 0.21 +0.8
189,701 + GFF1337 0.21 +1.1
189,701 + GFF1337 0.21 +0.7
189,701 + GFF1337 0.21 +0.6
189,701 + GFF1337 0.21 +0.8
189,702 - GFF1337 0.21 +0.6
189,702 - GFF1337 0.21 +1.1
189,702 - GFF1337 0.21 +0.9
189,788 + GFF1337 0.29 +0.6
189,788 + GFF1337 0.29 -0.1
189,789 - GFF1337 0.29 -0.1
189,849 - GFF1337 0.35 +0.3
189,905 + GFF1337 0.40 +1.9
189,906 - GFF1337 0.40 +0.1
189,906 - GFF1337 0.40 +0.6
189,906 - GFF1337 0.40 +0.7
190,037 + GFF1337 0.53 +1.9
190,037 + GFF1337 0.53 +0.5
190,037 + GFF1337 0.53 -0.7
190,038 - GFF1337 0.53 +0.9
190,038 - GFF1337 0.53 -0.7
190,038 - GFF1337 0.53 +0.4
190,214 + GFF1337 0.70 +1.1
190,214 + GFF1337 0.70 -0.7
190,214 + GFF1337 0.70 +0.9
190,214 + GFF1337 0.70 +0.9
190,214 + GFF1337 0.70 +0.7
190,214 + GFF1337 0.70 +0.8
190,214 + GFF1337 0.70 +0.5
190,214 + GFF1337 0.70 +1.2
190,214 + GFF1337 0.70 +0.2
190,215 - GFF1337 0.70 +0.8
190,215 - GFF1337 0.70 +0.9
190,215 - GFF1337 0.70 +0.7
190,215 - GFF1337 0.70 -0.1
190,215 - GFF1337 0.70 +1.0
190,215 - GFF1337 0.70 +0.7
190,215 - GFF1337 0.70 +0.1
190,215 - GFF1337 0.70 +0.9
190,215 - GFF1337 0.70 -0.3
190,215 - GFF1337 0.70 +1.1
190,215 - GFF1337 0.70 +0.5
190,215 - GFF1337 0.70 +1.6

Or see this region's nucleotide sequence