Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1310 and GFF1311 are separated by 27 nucleotides GFF1311 and GFF1312 are separated by 13 nucleotides GFF1312 and GFF1313 overlap by 4 nucleotides
GFF1310 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 161,555 to 162,295
GFF1310
GFF1311 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 162,323 to 162,985
GFF1311
GFF1312 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 162,999 to 163,619
GFF1312
GFF1313 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 163,616 to 164,704
GFF1313
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 163.620 kb on - strand at 163.620 kb on - strand at 163.620 kb on - strand at 163.620 kb on - strand at 163.666 kb on + strand at 163.667 kb on - strand at 163.667 kb on - strand at 163.667 kb on - strand at 163.667 kb on - strand at 163.711 kb on + strand at 163.711 kb on + strand at 163.711 kb on + strand at 163.711 kb on + strand at 163.712 kb on - strand at 163.712 kb on - strand at 163.712 kb on - strand at 163.712 kb on - strand at 163.950 kb on + strand, within GFF1313 at 163.950 kb on + strand, within GFF1313 at 163.951 kb on - strand, within GFF1313 at 163.951 kb on - strand, within GFF1313 at 163.951 kb on - strand, within GFF1313 at 163.951 kb on - strand, within GFF1313 at 163.951 kb on - strand, within GFF1313 at 163.951 kb on - strand, within GFF1313 at 164.004 kb on + strand, within GFF1313 at 164.004 kb on + strand, within GFF1313 at 164.004 kb on + strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.005 kb on - strand, within GFF1313 at 164.124 kb on + strand, within GFF1313 at 164.125 kb on - strand, within GFF1313 at 164.125 kb on - strand, within GFF1313 at 164.125 kb on - strand, within GFF1313 at 164.125 kb on - strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.235 kb on + strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.236 kb on - strand, within GFF1313 at 164.355 kb on + strand, within GFF1313 at 164.355 kb on + strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.356 kb on - strand, within GFF1313 at 164.484 kb on + strand, within GFF1313 at 164.485 kb on - strand, within GFF1313 at 164.485 kb on - strand, within GFF1313 at 164.485 kb on - strand, within GFF1313
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 163,620 - +3.2 163,620 - -1.1 163,620 - -0.1 163,620 - -0.4 163,666 + -1.1 163,667 - +0.2 163,667 - -0.2 163,667 - +0.9 163,667 - -1.0 163,711 + +0.7 163,711 + -0.1 163,711 + -0.9 163,711 + -0.5 163,712 - -0.3 163,712 - +0.4 163,712 - -0.5 163,712 - -0.8 163,950 + GFF1313 0.31 -0.7 163,950 + GFF1313 0.31 +0.3 163,951 - GFF1313 0.31 +0.3 163,951 - GFF1313 0.31 -0.6 163,951 - GFF1313 0.31 +0.3 163,951 - GFF1313 0.31 -0.3 163,951 - GFF1313 0.31 +0.2 163,951 - GFF1313 0.31 +0.5 164,004 + GFF1313 0.36 -0.1 164,004 + GFF1313 0.36 -0.1 164,004 + GFF1313 0.36 -0.9 164,005 - GFF1313 0.36 -2.0 164,005 - GFF1313 0.36 +0.1 164,005 - GFF1313 0.36 -0.3 164,005 - GFF1313 0.36 -0.1 164,005 - GFF1313 0.36 +0.6 164,005 - GFF1313 0.36 -1.7 164,005 - GFF1313 0.36 +1.2 164,124 + GFF1313 0.47 -0.3 164,125 - GFF1313 0.47 -0.7 164,125 - GFF1313 0.47 +0.8 164,125 - GFF1313 0.47 -0.9 164,125 - GFF1313 0.47 -0.7 164,235 + GFF1313 0.57 +1.5 164,235 + GFF1313 0.57 -0.1 164,235 + GFF1313 0.57 -0.1 164,235 + GFF1313 0.57 -0.8 164,235 + GFF1313 0.57 -0.1 164,235 + GFF1313 0.57 -0.1 164,235 + GFF1313 0.57 +0.0 164,235 + GFF1313 0.57 -0.1 164,235 + GFF1313 0.57 +0.7 164,235 + GFF1313 0.57 +0.1 164,236 - GFF1313 0.57 -0.6 164,236 - GFF1313 0.57 -0.0 164,236 - GFF1313 0.57 -0.2 164,236 - GFF1313 0.57 -0.0 164,236 - GFF1313 0.57 +0.3 164,236 - GFF1313 0.57 +1.9 164,236 - GFF1313 0.57 -0.7 164,236 - GFF1313 0.57 -0.2 164,236 - GFF1313 0.57 -1.1 164,236 - GFF1313 0.57 -0.2 164,355 + GFF1313 0.68 -0.2 164,355 + GFF1313 0.68 +0.2 164,356 - GFF1313 0.68 +0.8 164,356 - GFF1313 0.68 -0.9 164,356 - GFF1313 0.68 -1.0 164,356 - GFF1313 0.68 -0.3 164,356 - GFF1313 0.68 +0.0 164,356 - GFF1313 0.68 +0.1 164,356 - GFF1313 0.68 -0.8 164,356 - GFF1313 0.68 +0.3 164,356 - GFF1313 0.68 +0.1 164,356 - GFF1313 0.68 -0.6 164,356 - GFF1313 0.68 -0.4 164,356 - GFF1313 0.68 -0.1 164,484 + GFF1313 0.80 +1.3 164,485 - GFF1313 0.80 -0.8 164,485 - GFF1313 0.80 +0.9 164,485 - GFF1313 0.80 -0.5
Or see this region's nucleotide sequence