Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1273

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1271 and GFF1272 are separated by 182 nucleotidesGFF1272 and GFF1273 overlap by 4 nucleotidesGFF1273 and GFF1274 are separated by 20 nucleotides GFF1271 - Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type, at 128,812 to 130,557 GFF1271 GFF1272 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 130,740 to 131,381 GFF1272 GFF1273 - FIG005426: hypothetical protein, at 131,378 to 131,917 GFF1273 GFF1274 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 131,938 to 133,119 GFF1274 Position (kb) 131 132Strain fitness (log2 ratio) -1 0 1 2at 130.707 kb on + strandat 130.707 kb on + strandat 130.708 kb on - strandat 130.708 kb on - strandat 130.708 kb on - strandat 130.708 kb on - strandat 130.708 kb on - strandat 130.740 kb on - strandat 130.740 kb on - strandat 130.890 kb on + strand, within GFF1272at 130.890 kb on + strand, within GFF1272at 130.890 kb on + strand, within GFF1272at 130.891 kb on - strand, within GFF1272at 130.891 kb on - strand, within GFF1272at 130.968 kb on + strand, within GFF1272at 130.969 kb on - strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.013 kb on + strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.014 kb on - strand, within GFF1272at 131.037 kb on + strand, within GFF1272at 131.037 kb on + strand, within GFF1272at 131.038 kb on - strand, within GFF1272at 131.038 kb on - strand, within GFF1272at 131.038 kb on - strand, within GFF1272at 131.124 kb on + strand, within GFF1272at 131.125 kb on - strand, within GFF1272at 131.169 kb on + strand, within GFF1272at 131.169 kb on + strand, within GFF1272at 131.170 kb on - strand, within GFF1272at 131.170 kb on - strand, within GFF1272at 131.170 kb on - strand, within GFF1272at 131.170 kb on - strand, within GFF1272at 131.170 kb on - strand, within GFF1272at 131.199 kb on + strand, within GFF1272at 131.199 kb on + strand, within GFF1272at 131.200 kb on - strand, within GFF1272at 131.200 kb on - strand, within GFF1272at 131.229 kb on + strand, within GFF1272at 131.229 kb on + strand, within GFF1272at 131.229 kb on + strand, within GFF1272at 131.229 kb on + strand, within GFF1272at 131.588 kb on + strand, within GFF1273at 131.588 kb on + strand, within GFF1273at 131.588 kb on + strand, within GFF1273at 131.588 kb on + strand, within GFF1273at 131.589 kb on - strand, within GFF1273at 131.589 kb on - strand, within GFF1273at 131.589 kb on - strand, within GFF1273at 131.589 kb on - strand, within GFF1273at 131.589 kb on - strand, within GFF1273at 131.589 kb on - strand, within GFF1273at 131.639 kb on + strand, within GFF1273at 131.639 kb on + strand, within GFF1273at 131.639 kb on + strand, within GFF1273at 131.639 kb on + strand, within GFF1273at 131.640 kb on - strand, within GFF1273at 131.640 kb on - strand, within GFF1273at 131.640 kb on - strand, within GFF1273at 131.684 kb on + strand, within GFF1273at 131.684 kb on + strand, within GFF1273at 131.684 kb on + strand, within GFF1273at 131.684 kb on + strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.685 kb on - strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.723 kb on + strand, within GFF1273at 131.724 kb on - strand, within GFF1273at 131.724 kb on - strand, within GFF1273at 131.724 kb on - strand, within GFF1273at 131.724 kb on - strand, within GFF1273at 131.939 kb on + strandat 131.993 kb on + strandat 131.994 kb on - strandat 132.060 kb on - strand, within GFF1274at 132.060 kb on - strand, within GFF1274at 132.060 kb on - strand, within GFF1274at 132.527 kb on + strand, within GFF1274at 132.527 kb on + strand, within GFF1274at 132.527 kb on + strand, within GFF1274at 132.527 kb on + strand, within GFF1274at 132.528 kb on - strand, within GFF1274at 132.711 kb on - strand, within GFF1274at 132.791 kb on + strand, within GFF1274at 132.791 kb on + strand, within GFF1274at 132.791 kb on + strand, within GFF1274at 132.791 kb on + strand, within GFF1274at 132.792 kb on - strand, within GFF1274at 132.792 kb on - strand, within GFF1274at 132.792 kb on - strand, within GFF1274at 132.792 kb on - strand, within GFF1274

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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130,707 + +1.5
130,707 + +0.3
130,708 - +0.3
130,708 - +0.3
130,708 - +2.5
130,708 - +0.4
130,708 - +0.9
130,740 - +0.8
130,740 - +1.1
130,890 + GFF1272 0.23 +1.6
130,890 + GFF1272 0.23 +1.5
130,890 + GFF1272 0.23 +2.1
130,891 - GFF1272 0.24 +1.5
130,891 - GFF1272 0.24 +1.5
130,968 + GFF1272 0.36 +2.1
130,969 - GFF1272 0.36 +0.6
131,013 + GFF1272 0.43 +1.1
131,013 + GFF1272 0.43 +0.7
131,013 + GFF1272 0.43 +1.2
131,013 + GFF1272 0.43 +0.9
131,013 + GFF1272 0.43 +1.6
131,013 + GFF1272 0.43 +1.6
131,013 + GFF1272 0.43 +1.1
131,013 + GFF1272 0.43 +1.5
131,013 + GFF1272 0.43 +1.2
131,014 - GFF1272 0.43 +0.9
131,014 - GFF1272 0.43 +1.1
131,014 - GFF1272 0.43 +0.7
131,014 - GFF1272 0.43 +1.4
131,014 - GFF1272 0.43 +1.1
131,014 - GFF1272 0.43 +1.3
131,014 - GFF1272 0.43 +0.6
131,014 - GFF1272 0.43 +1.2
131,014 - GFF1272 0.43 +1.1
131,014 - GFF1272 0.43 +0.6
131,014 - GFF1272 0.43 +1.2
131,037 + GFF1272 0.46 +0.9
131,037 + GFF1272 0.46 +1.4
131,038 - GFF1272 0.46 +2.2
131,038 - GFF1272 0.46 +0.7
131,038 - GFF1272 0.46 +2.1
131,124 + GFF1272 0.60 +1.6
131,125 - GFF1272 0.60 +1.3
131,169 + GFF1272 0.67 +1.1
131,169 + GFF1272 0.67 +1.2
131,170 - GFF1272 0.67 +1.3
131,170 - GFF1272 0.67 +1.1
131,170 - GFF1272 0.67 +1.6
131,170 - GFF1272 0.67 +1.5
131,170 - GFF1272 0.67 +1.5
131,199 + GFF1272 0.71 +0.9
131,199 + GFF1272 0.71 +0.3
131,200 - GFF1272 0.72 +1.3
131,200 - GFF1272 0.72 +1.7
131,229 + GFF1272 0.76 +0.2
131,229 + GFF1272 0.76 +0.1
131,229 + GFF1272 0.76 -0.2
131,229 + GFF1272 0.76 +0.0
131,588 + GFF1273 0.39 +0.7
131,588 + GFF1273 0.39 -0.2
131,588 + GFF1273 0.39 -0.1
131,588 + GFF1273 0.39 +0.3
131,589 - GFF1273 0.39 -0.4
131,589 - GFF1273 0.39 +0.0
131,589 - GFF1273 0.39 +0.6
131,589 - GFF1273 0.39 -0.2
131,589 - GFF1273 0.39 -1.0
131,589 - GFF1273 0.39 -0.1
131,639 + GFF1273 0.48 -0.2
131,639 + GFF1273 0.48 -0.3
131,639 + GFF1273 0.48 +0.4
131,639 + GFF1273 0.48 +0.5
131,640 - GFF1273 0.49 +1.0
131,640 - GFF1273 0.49 -0.0
131,640 - GFF1273 0.49 -0.3
131,684 + GFF1273 0.57 +1.6
131,684 + GFF1273 0.57 +0.8
131,684 + GFF1273 0.57 +0.8
131,684 + GFF1273 0.57 -0.3
131,685 - GFF1273 0.57 -1.2
131,685 - GFF1273 0.57 +0.1
131,685 - GFF1273 0.57 +1.2
131,685 - GFF1273 0.57 +0.1
131,685 - GFF1273 0.57 -0.1
131,685 - GFF1273 0.57 +0.9
131,685 - GFF1273 0.57 +0.3
131,685 - GFF1273 0.57 -1.1
131,723 + GFF1273 0.64 -0.1
131,723 + GFF1273 0.64 -0.1
131,723 + GFF1273 0.64 +0.3
131,723 + GFF1273 0.64 +0.8
131,723 + GFF1273 0.64 -0.5
131,723 + GFF1273 0.64 -0.3
131,723 + GFF1273 0.64 +0.0
131,723 + GFF1273 0.64 -0.2
131,724 - GFF1273 0.64 -0.1
131,724 - GFF1273 0.64 -1.3
131,724 - GFF1273 0.64 +0.7
131,724 - GFF1273 0.64 +0.6
131,939 + +0.7
131,993 + +0.9
131,994 - -0.3
132,060 - GFF1274 0.10 +0.1
132,060 - GFF1274 0.10 +0.1
132,060 - GFF1274 0.10 -1.4
132,527 + GFF1274 0.50 +0.9
132,527 + GFF1274 0.50 +0.2
132,527 + GFF1274 0.50 +0.5
132,527 + GFF1274 0.50 +0.2
132,528 - GFF1274 0.50 -0.1
132,711 - GFF1274 0.65 -0.2
132,791 + GFF1274 0.72 -1.1
132,791 + GFF1274 0.72 +0.0
132,791 + GFF1274 0.72 +1.2
132,791 + GFF1274 0.72 +0.9
132,792 - GFF1274 0.72 +0.7
132,792 - GFF1274 0.72 -1.2
132,792 - GFF1274 0.72 +1.0
132,792 - GFF1274 0.72 +0.4

Or see this region's nucleotide sequence