Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF124

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
136,313	+				+1.0
136,313	+				-0.0
136,314	-				-0.4
136,314	-				-0.5
136,314	-				-0.8
136,314	-				-1.3
136,316	-				-0.6
136,317	+				-0.2
136,317	+				-0.2
136,317	+				-0.1
136,317	+				+0.2
136,317	+				+0.5
136,317	+				+0.2
136,317	+				-1.1
136,318	-				-0.3
136,318	-				-1.0
136,318	-				-2.7
136,318	-				-0.7
136,318	-				-1.0
136,318	-				-0.5
136,318	-				-1.5
136,337	+				-0.4
136,338	-				+0.3
136,420	+				-1.6
136,420	+				-2.6
136,609	+		GFF122	0.65	-1.6
136,609	+		GFF122	0.65	-2.0
136,609	+		GFF122	0.65	-2.3
136,610	-		GFF122	0.65	-2.0
136,610	-		GFF122	0.65	-1.1
136,705	+				-1.5
136,705	+				-1.5
136,705	+				-2.1
136,705	+				-2.1
136,705	+				-0.1
136,705	+				-1.3
136,705	+				-1.3
136,705	+				-1.9
136,705	+				+0.1
136,705	+				-1.6
136,705	+				-1.4
136,705	+				-0.7
136,706	-				-1.8
136,706	-				-1.1
136,706	-				-1.1
136,706	-				-1.3
136,706	-				-1.5
136,772	-				-0.2
136,794	+				-0.5
136,794	+				-0.7
136,794	+				-0.7
136,794	+				+0.2
136,794	+				-1.1
136,794	+				-0.3
136,794	+				-0.8
136,795	-				+0.4
136,795	-				-0.4
136,795	-				-0.2
136,795	-				-0.1
136,910	+		GFF123	0.26	-0.1
136,910	+		GFF123	0.26	+0.0
136,910	+		GFF123	0.26	-0.0
136,910	+		GFF123	0.26	-0.1
136,910	+		GFF123	0.26	-0.1
136,910	+		GFF123	0.26	-0.1
136,911	-		GFF123	0.27	-0.8
136,911	-		GFF123	0.27	+0.6
136,911	-		GFF123	0.27	-0.1
136,911	-		GFF123	0.27	-0.2
136,911	-		GFF123	0.27	+0.3
136,911	-		GFF123	0.27	-0.3
136,911	-		GFF123	0.27	-0.5
136,911	-		GFF123	0.27	-0.8
136,911	-		GFF123	0.27	+0.2
137,126	+		GFF123	0.72	-0.4
137,126	+		GFF123	0.72	-0.5
137,127	-		GFF123	0.72	-0.0
137,127	-		GFF123	0.72	-1.7
137,127	-		GFF123	0.72	-0.5
137,127	-		GFF123	0.72	-0.5
137,165	+		GFF123	0.80	-1.1
137,165	+		GFF123	0.80	-0.1
137,165	+		GFF123	0.80	-1.0
137,166	-		GFF123	0.80	+1.5
137,166	-		GFF123	0.80	-0.6
137,168	+		GFF123	0.81	-0.1
137,169	-		GFF123	0.81	+0.6
137,281	+				+0.9
137,281	+				+0.2
137,281	+				-0.1
137,281	+				+0.1
137,282	-				+0.1
137,377	+		GFF124	0.11	+2.5
137,377	+		GFF124	0.11	+1.3
137,378	-		GFF124	0.11	-1.6
137,378	-		GFF124	0.11	-0.1
137,587	+		GFF124	0.33	+0.6
137,588	-		GFF124	0.33	-1.1
137,588	-		GFF124	0.33	+0.2
137,588	-		GFF124	0.33	+0.5
137,668	+		GFF124	0.41	-1.7
137,749	+		GFF124	0.49	-0.7
137,749	+		GFF124	0.49	-0.5
137,750	-		GFF124	0.49	-0.7
137,951	-		GFF124	0.70	-1.0
137,974	+		GFF124	0.72	+0.6
137,975	-		GFF124	0.72	-1.0
138,136	+		GFF124	0.89	-0.8
138,136	+		GFF124	0.89	+0.1
138,137	-		GFF124	0.89	-0.8
138,137	-		GFF124	0.89	-0.7
138,139	+		GFF124	0.89	-0.4
138,139	+		GFF124	0.89	-2.3
138,139	+		GFF124	0.89	-0.3
138,140	-		GFF124	0.89	-0.3
138,140	-		GFF124	0.89	-1.4
138,252	-				+0.2
138,252	-				+0.2
138,252	-				+0.5
138,252	-				+0.0
138,256	+				-0.2
138,257	-				+0.3
138,257	-				+0.3
138,321	+				-0.1
138,321	+				+0.2
138,321	+				+0.2
138,321	+				+0.2
138,321	+				+0.1
138,322	-				-1.3
138,322	-				+0.9
138,322	-				+1.1
138,333	+				-0.3
138,333	+				-0.2
138,334	-				-1.1
138,334	-				-0.3
138,334	-				-0.3
138,334	-				-0.6
138,334	-				-0.7
138,651	+		GFF125	0.22	+2.1
138,651	+		GFF125	0.22	-0.5
138,651	+		GFF125	0.22	-0.7
138,651	+		GFF125	0.22	+0.2
138,651	+		GFF125	0.22	+0.3
138,651	+		GFF125	0.22	-0.5
138,652	-		GFF125	0.22	-0.1
138,652	-		GFF125	0.22	+0.3
138,652	-		GFF125	0.22	-0.7
138,792	+		GFF125	0.31	-1.5
138,792	+		GFF125	0.31	-0.2
138,792	+		GFF125	0.31	+0.1
138,793	-		GFF125	0.31	+1.1
138,793	-		GFF125	0.31	+0.1
138,793	-		GFF125	0.31	-0.3
138,793	-		GFF125	0.31	-1.4
138,793	-		GFF125	0.31	-0.1
138,793	-		GFF125	0.31	-0.1
138,793	-		GFF125	0.31	-0.6
138,795	+		GFF125	0.31	+0.8
138,796	-		GFF125	0.31	-0.2
138,796	-		GFF125	0.31	-0.7
138,870	+		GFF125	0.35	-0.2
138,870	+		GFF125	0.35	-2.3
138,870	+		GFF125	0.35	-1.4
138,870	+		GFF125	0.35	+0.1
138,871	-		GFF125	0.35	+0.1
138,871	-		GFF125	0.35	-0.6
138,871	-		GFF125	0.35	-0.5
138,871	-		GFF125	0.35	+0.8
138,871	-		GFF125	0.35	-0.5
138,949	-		GFF125	0.40	+0.9
138,949	-		GFF125	0.40	+0.4
138,981	+		GFF125	0.42	+0.1
138,982	-		GFF125	0.42	+0.3
139,242	+		GFF125	0.57	-0.2
139,242	+		GFF125	0.57	+1.1
139,242	+		GFF125	0.57	-1.1
139,243	-		GFF125	0.57	+0.0
139,243	-		GFF125	0.57	+0.7