Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1070 and GFF1071 are separated by 331 nucleotides GFF1071 and GFF1072 are separated by 14 nucleotides GFF1072 and GFF1073 are separated by 80 nucleotides
GFF1070 - Mobile element protein, at 819,505 to 820,218
GFF1070
GFF1071 - hypothetical protein, at 820,550 to 821,044
GFF1071
GFF1072 - hypothetical protein, at 821,059 to 821,274
GFF1072
GFF1073 - hypothetical protein, at 821,355 to 821,729
GFF1073
Position (kb) 820
821
822 Strain fitness (log2 ratio) -1
0
1
2 at 819.625 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 820.044 kb on + strand, within GFF1070 at 820.044 kb on + strand, within GFF1070 at 820.044 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.365 kb on + strand at 820.566 kb on - strand at 820.628 kb on - strand, within GFF1071 at 820.696 kb on - strand, within GFF1071 at 820.987 kb on - strand, within GFF1071 at 821.666 kb on + strand, within GFF1073 at 821.666 kb on + strand, within GFF1073 at 821.667 kb on - strand, within GFF1073 at 821.750 kb on - strand at 821.752 kb on + strand at 821.752 kb on + strand at 821.759 kb on + strand at 821.760 kb on - strand at 821.772 kb on - strand at 821.794 kb on + strand at 821.794 kb on + strand at 821.795 kb on - strand at 821.795 kb on - strand at 821.795 kb on - strand at 821.795 kb on - strand at 821.837 kb on - strand at 821.837 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand at 821.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 819,625 + GFF1070 0.17 +0.4 819,666 + GFF1070 0.23 -0.1 819,666 + GFF1070 0.23 -0.5 819,666 + GFF1070 0.23 +0.4 819,666 + GFF1070 0.23 +0.1 820,044 + GFF1070 0.75 -0.5 820,044 + GFF1070 0.75 +0.5 820,044 + GFF1070 0.75 -0.0 820,045 + GFF1070 0.76 +0.4 820,045 + GFF1070 0.76 +1.0 820,045 + GFF1070 0.76 -0.2 820,045 + GFF1070 0.76 +0.8 820,045 + GFF1070 0.76 -0.1 820,045 + GFF1070 0.76 +0.7 820,045 + GFF1070 0.76 -0.2 820,046 - GFF1070 0.76 -0.1 820,046 - GFF1070 0.76 +1.2 820,046 - GFF1070 0.76 -0.3 820,046 - GFF1070 0.76 +1.1 820,046 - GFF1070 0.76 -0.5 820,046 - GFF1070 0.76 +0.7 820,046 - GFF1070 0.76 +0.3 820,046 - GFF1070 0.76 +0.1 820,046 - GFF1070 0.76 +0.6 820,046 - GFF1070 0.76 +0.1 820,046 - GFF1070 0.76 -0.2 820,046 - GFF1070 0.76 +0.2 820,350 + -0.1 820,350 + +1.3 820,350 + -0.3 820,350 + -0.8 820,350 + +0.9 820,350 + -0.3 820,365 + -0.4 820,566 - -0.8 820,628 - GFF1071 0.16 +2.1 820,696 - GFF1071 0.29 -1.0 820,987 - GFF1071 0.88 +0.5 821,666 + GFF1073 0.83 -0.2 821,666 + GFF1073 0.83 -0.7 821,667 - GFF1073 0.83 -0.0 821,750 - +0.1 821,752 + -0.2 821,752 + +0.5 821,759 + -0.7 821,760 - +0.3 821,772 - +0.5 821,794 + +0.1 821,794 + +0.6 821,795 - -1.5 821,795 - -0.5 821,795 - -0.2 821,795 - +0.9 821,837 - -0.4 821,837 - -0.3 821,852 - +0.4 821,852 - -1.0 821,852 - +0.4 821,852 - -0.3 821,852 - +0.1 821,852 - +0.3 821,852 - -0.2 821,852 - +0.0 821,852 - +0.3 821,852 - -0.3 821,852 - +0.9
Or see this region's nucleotide sequence