Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS15275 and HMPREF1181_RS15280 are separated by 26 nucleotides HMPREF1181_RS15280 and HMPREF1181_RS15285 are separated by 98 nucleotides
HMPREF1181_RS15275: HMPREF1181_RS15275 - hypothetical protein, at 259,064 to 260,638
_RS15275
HMPREF1181_RS15280: HMPREF1181_RS15280 - DUF3868 domain-containing protein, at 260,665 to 262,101
_RS15280
HMPREF1181_RS15285: HMPREF1181_RS15285 - sugar MFS transporter, at 262,200 to 263,414
_RS15285
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.680 kb on + strand, within HMPREF1181_RS15275 at 259.796 kb on + strand, within HMPREF1181_RS15275 at 259.796 kb on + strand, within HMPREF1181_RS15275 at 259.797 kb on - strand, within HMPREF1181_RS15275 at 259.863 kb on - strand, within HMPREF1181_RS15275 at 259.863 kb on - strand, within HMPREF1181_RS15275 at 259.901 kb on - strand, within HMPREF1181_RS15275 at 260.176 kb on - strand, within HMPREF1181_RS15275 at 260.284 kb on + strand, within HMPREF1181_RS15275 at 260.285 kb on - strand, within HMPREF1181_RS15275 at 260.285 kb on - strand, within HMPREF1181_RS15275 at 260.418 kb on - strand, within HMPREF1181_RS15275 at 260.605 kb on + strand at 260.606 kb on - strand at 260.677 kb on + strand at 260.678 kb on - strand at 260.802 kb on - strand at 260.844 kb on - strand, within HMPREF1181_RS15280 at 260.844 kb on - strand, within HMPREF1181_RS15280 at 260.886 kb on - strand, within HMPREF1181_RS15280 at 260.886 kb on - strand, within HMPREF1181_RS15280 at 260.948 kb on - strand, within HMPREF1181_RS15280 at 260.948 kb on - strand, within HMPREF1181_RS15280 at 260.959 kb on + strand, within HMPREF1181_RS15280 at 260.959 kb on + strand, within HMPREF1181_RS15280 at 260.962 kb on - strand, within HMPREF1181_RS15280 at 260.962 kb on - strand, within HMPREF1181_RS15280 at 260.962 kb on - strand, within HMPREF1181_RS15280 at 260.967 kb on + strand, within HMPREF1181_RS15280 at 261.010 kb on - strand, within HMPREF1181_RS15280 at 261.014 kb on + strand, within HMPREF1181_RS15280 at 261.052 kb on - strand, within HMPREF1181_RS15280 at 261.096 kb on - strand, within HMPREF1181_RS15280 at 261.251 kb on + strand, within HMPREF1181_RS15280 at 261.251 kb on + strand, within HMPREF1181_RS15280 at 261.251 kb on + strand, within HMPREF1181_RS15280 at 261.251 kb on + strand, within HMPREF1181_RS15280 at 261.251 kb on + strand, within HMPREF1181_RS15280 at 261.252 kb on - strand, within HMPREF1181_RS15280 at 261.252 kb on - strand, within HMPREF1181_RS15280 at 261.256 kb on + strand, within HMPREF1181_RS15280 at 261.256 kb on + strand, within HMPREF1181_RS15280 at 261.257 kb on - strand, within HMPREF1181_RS15280 at 261.263 kb on + strand, within HMPREF1181_RS15280 at 261.380 kb on + strand, within HMPREF1181_RS15280 at 261.461 kb on - strand, within HMPREF1181_RS15280 at 261.495 kb on - strand, within HMPREF1181_RS15280 at 261.503 kb on + strand, within HMPREF1181_RS15280 at 261.598 kb on + strand, within HMPREF1181_RS15280 at 261.676 kb on + strand, within HMPREF1181_RS15280 at 261.703 kb on - strand, within HMPREF1181_RS15280 at 261.760 kb on + strand, within HMPREF1181_RS15280 at 261.760 kb on + strand, within HMPREF1181_RS15280 at 261.763 kb on - strand, within HMPREF1181_RS15280 at 261.796 kb on + strand, within HMPREF1181_RS15280 at 261.797 kb on - strand, within HMPREF1181_RS15280 at 261.848 kb on - strand, within HMPREF1181_RS15280 at 261.879 kb on + strand, within HMPREF1181_RS15280 at 261.879 kb on + strand, within HMPREF1181_RS15280 at 261.892 kb on - strand, within HMPREF1181_RS15280 at 261.919 kb on + strand, within HMPREF1181_RS15280 at 261.951 kb on - strand, within HMPREF1181_RS15280 at 261.951 kb on - strand, within HMPREF1181_RS15280 at 261.951 kb on - strand, within HMPREF1181_RS15280 at 262.099 kb on + strand at 262.100 kb on - strand at 262.104 kb on + strand at 262.105 kb on - strand at 262.174 kb on + strand at 262.177 kb on + strand at 262.178 kb on - strand at 262.180 kb on - strand at 262.187 kb on - strand at 262.202 kb on - strand at 262.202 kb on - strand at 262.249 kb on - strand at 262.258 kb on + strand at 262.299 kb on - strand at 262.333 kb on - strand, within HMPREF1181_RS15285 at 262.421 kb on + strand, within HMPREF1181_RS15285 at 262.430 kb on + strand, within HMPREF1181_RS15285 at 262.430 kb on + strand, within HMPREF1181_RS15285 at 262.430 kb on + strand, within HMPREF1181_RS15285 at 262.431 kb on - strand, within HMPREF1181_RS15285 at 262.434 kb on - strand, within HMPREF1181_RS15285 at 262.434 kb on - strand, within HMPREF1181_RS15285 at 262.555 kb on - strand, within HMPREF1181_RS15285 at 262.666 kb on - strand, within HMPREF1181_RS15285 at 262.670 kb on - strand, within HMPREF1181_RS15285 at 262.764 kb on + strand, within HMPREF1181_RS15285 at 262.818 kb on - strand, within HMPREF1181_RS15285 at 262.818 kb on - strand, within HMPREF1181_RS15285 at 262.818 kb on - strand, within HMPREF1181_RS15285 at 262.840 kb on - strand, within HMPREF1181_RS15285 at 262.866 kb on + strand, within HMPREF1181_RS15285 at 262.866 kb on + strand, within HMPREF1181_RS15285 at 262.866 kb on + strand, within HMPREF1181_RS15285 at 262.867 kb on - strand, within HMPREF1181_RS15285 at 262.870 kb on + strand, within HMPREF1181_RS15285 at 262.871 kb on - strand, within HMPREF1181_RS15285 at 262.871 kb on - strand, within HMPREF1181_RS15285
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 259,680 + HMPREF1181_RS15275 0.39 +0.3 259,796 + HMPREF1181_RS15275 0.46 -1.5 259,796 + HMPREF1181_RS15275 0.46 +0.4 259,797 - HMPREF1181_RS15275 0.47 -1.3 259,863 - HMPREF1181_RS15275 0.51 -1.7 259,863 - HMPREF1181_RS15275 0.51 +0.9 259,901 - HMPREF1181_RS15275 0.53 +0.2 260,176 - HMPREF1181_RS15275 0.71 -2.3 260,284 + HMPREF1181_RS15275 0.77 +0.9 260,285 - HMPREF1181_RS15275 0.78 +0.3 260,285 - HMPREF1181_RS15275 0.78 -2.2 260,418 - HMPREF1181_RS15275 0.86 +0.2 260,605 + -0.1 260,606 - -0.1 260,677 + -1.8 260,678 - -0.3 260,802 - +0.1 260,844 - HMPREF1181_RS15280 0.12 +1.1 260,844 - HMPREF1181_RS15280 0.12 +1.4 260,886 - HMPREF1181_RS15280 0.15 -0.1 260,886 - HMPREF1181_RS15280 0.15 -0.1 260,948 - HMPREF1181_RS15280 0.20 -1.4 260,948 - HMPREF1181_RS15280 0.20 +1.6 260,959 + HMPREF1181_RS15280 0.20 +0.3 260,959 + HMPREF1181_RS15280 0.20 +1.2 260,962 - HMPREF1181_RS15280 0.21 +0.5 260,962 - HMPREF1181_RS15280 0.21 -1.2 260,962 - HMPREF1181_RS15280 0.21 -0.6 260,967 + HMPREF1181_RS15280 0.21 +1.2 261,010 - HMPREF1181_RS15280 0.24 +0.6 261,014 + HMPREF1181_RS15280 0.24 +0.7 261,052 - HMPREF1181_RS15280 0.27 +1.1 261,096 - HMPREF1181_RS15280 0.30 +0.6 261,251 + HMPREF1181_RS15280 0.41 -1.2 261,251 + HMPREF1181_RS15280 0.41 +0.9 261,251 + HMPREF1181_RS15280 0.41 -1.2 261,251 + HMPREF1181_RS15280 0.41 -2.1 261,251 + HMPREF1181_RS15280 0.41 -1.3 261,252 - HMPREF1181_RS15280 0.41 +0.1 261,252 - HMPREF1181_RS15280 0.41 -0.1 261,256 + HMPREF1181_RS15280 0.41 -1.1 261,256 + HMPREF1181_RS15280 0.41 +0.1 261,257 - HMPREF1181_RS15280 0.41 +1.5 261,263 + HMPREF1181_RS15280 0.42 -2.0 261,380 + HMPREF1181_RS15280 0.50 +1.1 261,461 - HMPREF1181_RS15280 0.55 -0.1 261,495 - HMPREF1181_RS15280 0.58 -0.0 261,503 + HMPREF1181_RS15280 0.58 -1.3 261,598 + HMPREF1181_RS15280 0.65 +1.2 261,676 + HMPREF1181_RS15280 0.70 -0.1 261,703 - HMPREF1181_RS15280 0.72 -2.2 261,760 + HMPREF1181_RS15280 0.76 -3.2 261,760 + HMPREF1181_RS15280 0.76 -0.7 261,763 - HMPREF1181_RS15280 0.76 +0.4 261,796 + HMPREF1181_RS15280 0.79 -0.8 261,797 - HMPREF1181_RS15280 0.79 -1.3 261,848 - HMPREF1181_RS15280 0.82 +1.6 261,879 + HMPREF1181_RS15280 0.84 -0.1 261,879 + HMPREF1181_RS15280 0.84 +0.5 261,892 - HMPREF1181_RS15280 0.85 -1.0 261,919 + HMPREF1181_RS15280 0.87 +0.7 261,951 - HMPREF1181_RS15280 0.89 +1.6 261,951 - HMPREF1181_RS15280 0.89 -0.7 261,951 - HMPREF1181_RS15280 0.89 -0.8 262,099 + -1.3 262,100 - +0.9 262,104 + -0.7 262,105 - +1.0 262,174 + -0.1 262,177 + -2.3 262,178 - +0.1 262,180 - -1.8 262,187 - -0.3 262,202 - +1.5 262,202 - -1.8 262,249 - +0.6 262,258 + -0.1 262,299 - -1.6 262,333 - HMPREF1181_RS15285 0.11 -0.3 262,421 + HMPREF1181_RS15285 0.18 -1.8 262,430 + HMPREF1181_RS15285 0.19 -0.5 262,430 + HMPREF1181_RS15285 0.19 +0.7 262,430 + HMPREF1181_RS15285 0.19 +1.9 262,431 - HMPREF1181_RS15285 0.19 +0.9 262,434 - HMPREF1181_RS15285 0.19 +1.3 262,434 - HMPREF1181_RS15285 0.19 +1.3 262,555 - HMPREF1181_RS15285 0.29 -2.7 262,666 - HMPREF1181_RS15285 0.38 +0.3 262,670 - HMPREF1181_RS15285 0.39 +1.1 262,764 + HMPREF1181_RS15285 0.46 +0.8 262,818 - HMPREF1181_RS15285 0.51 -1.4 262,818 - HMPREF1181_RS15285 0.51 +1.4 262,818 - HMPREF1181_RS15285 0.51 +1.0 262,840 - HMPREF1181_RS15285 0.53 +0.8 262,866 + HMPREF1181_RS15285 0.55 +1.2 262,866 + HMPREF1181_RS15285 0.55 +1.1 262,866 + HMPREF1181_RS15285 0.55 +0.6 262,867 - HMPREF1181_RS15285 0.55 +0.8 262,870 + HMPREF1181_RS15285 0.55 -0.0 262,871 - HMPREF1181_RS15285 0.55 -2.3 262,871 - HMPREF1181_RS15285 0.55 +1.4
Or see this region's nucleotide sequence