Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14840 and HMPREF1181_RS14845 overlap by 4 nucleotides HMPREF1181_RS14845 and HMPREF1181_RS14850 are separated by 11 nucleotides HMPREF1181_RS14850 and HMPREF1181_RS14855 are separated by 10 nucleotides
HMPREF1181_RS14840: HMPREF1181_RS14840 - insulinase family protein, at 152,078 to 153,388
_RS14840
HMPREF1181_RS14845: HMPREF1181_RS14845 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 153,385 to 154,143
_RS14845
HMPREF1181_RS14850: HMPREF1181_RS14850 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 154,155 to 154,580
_RS14850
HMPREF1181_RS14855: HMPREF1181_RS14855 - transglycosylase domain-containing protein, at 154,591 to 156,918
_RS14855
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.456 kb on - strand, within HMPREF1181_RS14840 at 152.464 kb on + strand, within HMPREF1181_RS14840 at 152.464 kb on + strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.713 kb on + strand, within HMPREF1181_RS14840 at 152.713 kb on + strand, within HMPREF1181_RS14840 at 152.714 kb on - strand, within HMPREF1181_RS14840 at 152.833 kb on - strand, within HMPREF1181_RS14840 at 152.877 kb on + strand, within HMPREF1181_RS14840 at 152.879 kb on + strand, within HMPREF1181_RS14840 at 152.879 kb on + strand, within HMPREF1181_RS14840 at 152.951 kb on - strand, within HMPREF1181_RS14840 at 152.951 kb on - strand, within HMPREF1181_RS14840 at 152.957 kb on + strand, within HMPREF1181_RS14840 at 152.962 kb on + strand, within HMPREF1181_RS14840 at 152.963 kb on - strand, within HMPREF1181_RS14840 at 153.063 kb on + strand, within HMPREF1181_RS14840 at 153.063 kb on + strand, within HMPREF1181_RS14840 at 153.070 kb on - strand, within HMPREF1181_RS14840 at 153.106 kb on - strand, within HMPREF1181_RS14840 at 153.108 kb on + strand, within HMPREF1181_RS14840 at 153.167 kb on - strand, within HMPREF1181_RS14840 at 153.234 kb on - strand, within HMPREF1181_RS14840 at 153.293 kb on - strand at 153.343 kb on + strand at 154.144 kb on - strand at 154.170 kb on - strand at 154.175 kb on - strand at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.272 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.303 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.363 kb on - strand, within HMPREF1181_RS14850
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 152,456 - HMPREF1181_RS14840 0.29 -0.7 152,464 + HMPREF1181_RS14840 0.29 +1.2 152,464 + HMPREF1181_RS14840 0.29 +1.2 152,465 - HMPREF1181_RS14840 0.30 +1.8 152,465 - HMPREF1181_RS14840 0.30 +1.7 152,465 - HMPREF1181_RS14840 0.30 +0.5 152,465 - HMPREF1181_RS14840 0.30 +1.7 152,465 - HMPREF1181_RS14840 0.30 +1.1 152,713 + HMPREF1181_RS14840 0.48 -2.0 152,713 + HMPREF1181_RS14840 0.48 -1.2 152,714 - HMPREF1181_RS14840 0.49 -1.1 152,833 - HMPREF1181_RS14840 0.58 -1.5 152,877 + HMPREF1181_RS14840 0.61 -1.0 152,879 + HMPREF1181_RS14840 0.61 +0.5 152,879 + HMPREF1181_RS14840 0.61 -0.2 152,951 - HMPREF1181_RS14840 0.67 +1.3 152,951 - HMPREF1181_RS14840 0.67 +1.2 152,957 + HMPREF1181_RS14840 0.67 -0.7 152,962 + HMPREF1181_RS14840 0.67 +0.9 152,963 - HMPREF1181_RS14840 0.68 -0.4 153,063 + HMPREF1181_RS14840 0.75 -0.0 153,063 + HMPREF1181_RS14840 0.75 +0.7 153,070 - HMPREF1181_RS14840 0.76 +1.6 153,106 - HMPREF1181_RS14840 0.78 -1.1 153,108 + HMPREF1181_RS14840 0.79 -0.8 153,167 - HMPREF1181_RS14840 0.83 +1.2 153,234 - HMPREF1181_RS14840 0.88 +1.5 153,293 - -1.0 153,343 + +0.7 154,144 - -0.7 154,170 - +0.6 154,175 - +0.5 154,245 - HMPREF1181_RS14850 0.21 +0.3 154,245 - HMPREF1181_RS14850 0.21 -0.7 154,272 - HMPREF1181_RS14850 0.27 -0.7 154,274 - HMPREF1181_RS14850 0.28 +0.2 154,274 - HMPREF1181_RS14850 0.28 -0.3 154,303 - HMPREF1181_RS14850 0.35 -0.5 154,315 - HMPREF1181_RS14850 0.38 +1.9 154,315 - HMPREF1181_RS14850 0.38 +0.3 154,363 - HMPREF1181_RS14850 0.49 +0.0
Or see this region's nucleotide sequence