Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS12930 and HMPREF1181_RS12935 are separated by 49 nucleotides
HMPREF1181_RS12930: HMPREF1181_RS12930 - DUF5074 domain-containing protein, at 78,052 to 79,983
_RS12930
HMPREF1181_RS12935: HMPREF1181_RS12935 - hypothetical protein, at 80,033 to 81,595
_RS12935
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.924 kb on - strand at 78.034 kb on - strand at 78.051 kb on - strand at 78.054 kb on - strand at 78.123 kb on - strand at 78.134 kb on - strand at 78.134 kb on - strand at 78.197 kb on + strand at 78.218 kb on + strand at 78.218 kb on + strand at 78.360 kb on - strand, within HMPREF1181_RS12930 at 78.415 kb on - strand, within HMPREF1181_RS12930 at 78.914 kb on + strand, within HMPREF1181_RS12930 at 78.914 kb on + strand, within HMPREF1181_RS12930 at 78.914 kb on + strand, within HMPREF1181_RS12930 at 78.915 kb on - strand, within HMPREF1181_RS12930 at 78.915 kb on - strand, within HMPREF1181_RS12930 at 78.936 kb on - strand, within HMPREF1181_RS12930 at 78.936 kb on - strand, within HMPREF1181_RS12930 at 79.019 kb on + strand, within HMPREF1181_RS12930 at 79.130 kb on - strand, within HMPREF1181_RS12930 at 79.211 kb on + strand, within HMPREF1181_RS12930 at 79.211 kb on + strand, within HMPREF1181_RS12930 at 79.229 kb on - strand, within HMPREF1181_RS12930 at 79.387 kb on - strand, within HMPREF1181_RS12930 at 79.387 kb on - strand, within HMPREF1181_RS12930 at 79.390 kb on + strand, within HMPREF1181_RS12930 at 79.566 kb on + strand, within HMPREF1181_RS12930 at 79.700 kb on - strand, within HMPREF1181_RS12930 at 79.700 kb on - strand, within HMPREF1181_RS12930 at 79.732 kb on + strand, within HMPREF1181_RS12930 at 79.818 kb on + strand at 79.904 kb on + strand at 79.966 kb on + strand at 79.967 kb on - strand at 79.979 kb on + strand at 80.009 kb on + strand at 80.016 kb on - strand at 80.143 kb on - strand at 80.143 kb on - strand at 80.143 kb on - strand at 80.207 kb on + strand, within HMPREF1181_RS12935 at 80.225 kb on - strand, within HMPREF1181_RS12935 at 80.271 kb on + strand, within HMPREF1181_RS12935 at 80.392 kb on - strand, within HMPREF1181_RS12935 at 80.404 kb on + strand, within HMPREF1181_RS12935 at 80.410 kb on - strand, within HMPREF1181_RS12935 at 80.459 kb on + strand, within HMPREF1181_RS12935 at 80.460 kb on - strand, within HMPREF1181_RS12935 at 80.462 kb on - strand, within HMPREF1181_RS12935 at 80.464 kb on - strand, within HMPREF1181_RS12935 at 80.464 kb on - strand, within HMPREF1181_RS12935 at 80.542 kb on - strand, within HMPREF1181_RS12935 at 80.601 kb on + strand, within HMPREF1181_RS12935 at 80.602 kb on - strand, within HMPREF1181_RS12935 at 80.643 kb on - strand, within HMPREF1181_RS12935 at 80.650 kb on - strand, within HMPREF1181_RS12935 at 80.691 kb on + strand, within HMPREF1181_RS12935 at 80.706 kb on - strand, within HMPREF1181_RS12935 at 80.816 kb on - strand, within HMPREF1181_RS12935 at 80.832 kb on - strand, within HMPREF1181_RS12935 at 80.941 kb on - strand, within HMPREF1181_RS12935 at 80.941 kb on - strand, within HMPREF1181_RS12935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 77,924 - +0.0 78,034 - +1.1 78,051 - +0.4 78,054 - -0.7 78,123 - -0.1 78,134 - -0.5 78,134 - -3.3 78,197 + -0.0 78,218 + +0.7 78,218 + -0.5 78,360 - HMPREF1181_RS12930 0.16 -1.6 78,415 - HMPREF1181_RS12930 0.19 -0.1 78,914 + HMPREF1181_RS12930 0.45 +0.9 78,914 + HMPREF1181_RS12930 0.45 +1.0 78,914 + HMPREF1181_RS12930 0.45 +0.4 78,915 - HMPREF1181_RS12930 0.45 +0.9 78,915 - HMPREF1181_RS12930 0.45 +0.4 78,936 - HMPREF1181_RS12930 0.46 +0.3 78,936 - HMPREF1181_RS12930 0.46 +0.9 79,019 + HMPREF1181_RS12930 0.50 -0.5 79,130 - HMPREF1181_RS12930 0.56 -2.2 79,211 + HMPREF1181_RS12930 0.60 -0.6 79,211 + HMPREF1181_RS12930 0.60 +0.5 79,229 - HMPREF1181_RS12930 0.61 -0.2 79,387 - HMPREF1181_RS12930 0.69 -2.0 79,387 - HMPREF1181_RS12930 0.69 +0.9 79,390 + HMPREF1181_RS12930 0.69 +1.3 79,566 + HMPREF1181_RS12930 0.78 -1.3 79,700 - HMPREF1181_RS12930 0.85 -2.5 79,700 - HMPREF1181_RS12930 0.85 +2.6 79,732 + HMPREF1181_RS12930 0.87 -0.2 79,818 + -1.4 79,904 + -1.4 79,966 + -1.5 79,967 - -1.5 79,979 + -2.5 80,009 + +0.4 80,016 - -1.9 80,143 - +0.9 80,143 - -0.7 80,143 - -0.5 80,207 + HMPREF1181_RS12935 0.11 -1.9 80,225 - HMPREF1181_RS12935 0.12 -2.0 80,271 + HMPREF1181_RS12935 0.15 +0.7 80,392 - HMPREF1181_RS12935 0.23 -2.2 80,404 + HMPREF1181_RS12935 0.24 +0.4 80,410 - HMPREF1181_RS12935 0.24 -1.5 80,459 + HMPREF1181_RS12935 0.27 -0.9 80,460 - HMPREF1181_RS12935 0.27 +1.2 80,462 - HMPREF1181_RS12935 0.27 -2.0 80,464 - HMPREF1181_RS12935 0.28 -0.9 80,464 - HMPREF1181_RS12935 0.28 -1.7 80,542 - HMPREF1181_RS12935 0.33 -0.7 80,601 + HMPREF1181_RS12935 0.36 -1.8 80,602 - HMPREF1181_RS12935 0.36 +0.6 80,643 - HMPREF1181_RS12935 0.39 -2.5 80,650 - HMPREF1181_RS12935 0.39 -0.7 80,691 + HMPREF1181_RS12935 0.42 +0.8 80,706 - HMPREF1181_RS12935 0.43 +0.7 80,816 - HMPREF1181_RS12935 0.50 -2.3 80,832 - HMPREF1181_RS12935 0.51 -1.0 80,941 - HMPREF1181_RS12935 0.58 +0.5 80,941 - HMPREF1181_RS12935 0.58 -0.1
Or see this region's nucleotide sequence