Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS08490 and HMPREF1181_RS08495 are separated by 261 nucleotides HMPREF1181_RS08495 and HMPREF1181_RS08500 are separated by 1 nucleotides
HMPREF1181_RS08490: HMPREF1181_RS08490 - heparinase II/III family protein, at 240,908 to 242,872
_RS08490
HMPREF1181_RS08495: HMPREF1181_RS08495 - methylmalonyl-CoA mutase, at 243,134 to 245,281
_RS08495
HMPREF1181_RS08500: HMPREF1181_RS08500 - methylmalonyl-CoA mutase small subunit, at 245,283 to 247,181
_RS08500
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 242.140 kb on + strand, within HMPREF1181_RS08490 at 242.264 kb on + strand, within HMPREF1181_RS08490 at 242.268 kb on - strand, within HMPREF1181_RS08490 at 242.302 kb on - strand, within HMPREF1181_RS08490 at 242.305 kb on + strand, within HMPREF1181_RS08490 at 242.306 kb on - strand, within HMPREF1181_RS08490 at 242.309 kb on + strand, within HMPREF1181_RS08490 at 242.312 kb on - strand, within HMPREF1181_RS08490 at 242.439 kb on - strand, within HMPREF1181_RS08490 at 242.528 kb on + strand, within HMPREF1181_RS08490 at 242.601 kb on + strand, within HMPREF1181_RS08490 at 242.602 kb on - strand, within HMPREF1181_RS08490 at 242.605 kb on - strand, within HMPREF1181_RS08490 at 242.691 kb on - strand at 242.696 kb on - strand at 242.749 kb on - strand at 242.835 kb on + strand at 242.855 kb on - strand at 242.855 kb on - strand at 242.898 kb on + strand at 242.929 kb on - strand at 243.101 kb on + strand at 243.224 kb on - strand at 243.428 kb on - strand, within HMPREF1181_RS08495 at 243.431 kb on + strand, within HMPREF1181_RS08495 at 243.506 kb on - strand, within HMPREF1181_RS08495 at 243.637 kb on + strand, within HMPREF1181_RS08495 at 243.637 kb on + strand, within HMPREF1181_RS08495 at 243.638 kb on - strand, within HMPREF1181_RS08495 at 244.077 kb on + strand, within HMPREF1181_RS08495 at 244.117 kb on - strand, within HMPREF1181_RS08495 at 244.132 kb on + strand, within HMPREF1181_RS08495 at 244.134 kb on + strand, within HMPREF1181_RS08495 at 244.135 kb on - strand, within HMPREF1181_RS08495 at 244.145 kb on - strand, within HMPREF1181_RS08495 at 244.148 kb on - strand, within HMPREF1181_RS08495 at 244.384 kb on + strand, within HMPREF1181_RS08495 at 244.385 kb on - strand, within HMPREF1181_RS08495 at 244.601 kb on - strand, within HMPREF1181_RS08495 at 244.768 kb on - strand, within HMPREF1181_RS08495 at 244.812 kb on - strand, within HMPREF1181_RS08495 at 244.812 kb on - strand, within HMPREF1181_RS08495 at 245.064 kb on + strand, within HMPREF1181_RS08495 at 245.250 kb on + strand at 245.250 kb on + strand at 245.252 kb on + strand at 245.252 kb on + strand at 245.252 kb on + strand at 245.594 kb on - strand, within HMPREF1181_RS08500 at 245.615 kb on + strand, within HMPREF1181_RS08500 at 245.639 kb on + strand, within HMPREF1181_RS08500 at 245.874 kb on - strand, within HMPREF1181_RS08500 at 246.109 kb on + strand, within HMPREF1181_RS08500 at 246.195 kb on + strand, within HMPREF1181_RS08500
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 242,140 + HMPREF1181_RS08490 0.63 -2.2 242,264 + HMPREF1181_RS08490 0.69 -2.2 242,268 - HMPREF1181_RS08490 0.69 +0.5 242,302 - HMPREF1181_RS08490 0.71 +0.9 242,305 + HMPREF1181_RS08490 0.71 +0.4 242,306 - HMPREF1181_RS08490 0.71 +1.1 242,309 + HMPREF1181_RS08490 0.71 +0.3 242,312 - HMPREF1181_RS08490 0.71 -0.1 242,439 - HMPREF1181_RS08490 0.78 +1.0 242,528 + HMPREF1181_RS08490 0.82 +1.7 242,601 + HMPREF1181_RS08490 0.86 -1.6 242,602 - HMPREF1181_RS08490 0.86 -1.0 242,605 - HMPREF1181_RS08490 0.86 +0.9 242,691 - -0.7 242,696 - -1.9 242,749 - +0.9 242,835 + -2.1 242,855 - -0.1 242,855 - -0.1 242,898 + -2.6 242,929 - -0.1 243,101 + +0.3 243,224 - -0.9 243,428 - HMPREF1181_RS08495 0.14 -0.8 243,431 + HMPREF1181_RS08495 0.14 -1.7 243,506 - HMPREF1181_RS08495 0.17 -0.2 243,637 + HMPREF1181_RS08495 0.23 -1.7 243,637 + HMPREF1181_RS08495 0.23 -1.7 243,638 - HMPREF1181_RS08495 0.23 -3.2 244,077 + HMPREF1181_RS08495 0.44 -0.4 244,117 - HMPREF1181_RS08495 0.46 +0.1 244,132 + HMPREF1181_RS08495 0.46 -3.3 244,134 + HMPREF1181_RS08495 0.47 -0.9 244,135 - HMPREF1181_RS08495 0.47 +1.0 244,145 - HMPREF1181_RS08495 0.47 -3.1 244,148 - HMPREF1181_RS08495 0.47 -0.2 244,384 + HMPREF1181_RS08495 0.58 -1.6 244,385 - HMPREF1181_RS08495 0.58 -2.5 244,601 - HMPREF1181_RS08495 0.68 -1.6 244,768 - HMPREF1181_RS08495 0.76 -0.4 244,812 - HMPREF1181_RS08495 0.78 -2.3 244,812 - HMPREF1181_RS08495 0.78 -2.4 245,064 + HMPREF1181_RS08495 0.90 -1.6 245,250 + -0.8 245,250 + -2.7 245,252 + -3.2 245,252 + -1.4 245,252 + -3.6 245,594 - HMPREF1181_RS08500 0.16 -0.6 245,615 + HMPREF1181_RS08500 0.17 -0.2 245,639 + HMPREF1181_RS08500 0.19 -3.3 245,874 - HMPREF1181_RS08500 0.31 -1.0 246,109 + HMPREF1181_RS08500 0.43 -1.4 246,195 + HMPREF1181_RS08500 0.48 -1.7
Or see this region's nucleotide sequence