Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06000 and HMPREF1181_RS06005 are separated by 22 nucleotides HMPREF1181_RS06005 and HMPREF1181_RS06010 are separated by 141 nucleotides
HMPREF1181_RS06000: HMPREF1181_RS06000 - GH92 family glycosyl hydrolase, at 533,800 to 536,091
_RS06000
HMPREF1181_RS06005: HMPREF1181_RS06005 - glycoside hydrolase family 130 protein, at 536,114 to 537,097
_RS06005
HMPREF1181_RS06010: HMPREF1181_RS06010 - MFS transporter, at 537,239 to 538,558
_RS06010
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 535.172 kb on - strand, within HMPREF1181_RS06000 at 535.262 kb on - strand, within HMPREF1181_RS06000 at 535.465 kb on + strand, within HMPREF1181_RS06000 at 535.481 kb on + strand, within HMPREF1181_RS06000 at 535.482 kb on - strand, within HMPREF1181_RS06000 at 535.587 kb on + strand, within HMPREF1181_RS06000 at 535.588 kb on - strand, within HMPREF1181_RS06000 at 535.663 kb on - strand, within HMPREF1181_RS06000 at 535.686 kb on - strand, within HMPREF1181_RS06000 at 535.686 kb on - strand, within HMPREF1181_RS06000 at 535.737 kb on - strand, within HMPREF1181_RS06000 at 535.886 kb on + strand at 535.887 kb on - strand at 535.977 kb on + strand at 536.065 kb on + strand at 536.129 kb on - strand at 536.202 kb on + strand at 536.203 kb on - strand at 536.255 kb on + strand, within HMPREF1181_RS06005 at 536.255 kb on + strand, within HMPREF1181_RS06005 at 536.260 kb on + strand, within HMPREF1181_RS06005 at 536.380 kb on - strand, within HMPREF1181_RS06005 at 536.484 kb on - strand, within HMPREF1181_RS06005 at 536.576 kb on - strand, within HMPREF1181_RS06005 at 536.576 kb on - strand, within HMPREF1181_RS06005 at 536.662 kb on + strand, within HMPREF1181_RS06005 at 536.704 kb on + strand, within HMPREF1181_RS06005 at 536.754 kb on + strand, within HMPREF1181_RS06005 at 536.797 kb on - strand, within HMPREF1181_RS06005 at 536.908 kb on + strand, within HMPREF1181_RS06005 at 537.036 kb on - strand at 537.085 kb on + strand at 537.092 kb on - strand at 537.112 kb on - strand at 537.141 kb on + strand at 537.142 kb on - strand at 537.145 kb on + strand at 537.148 kb on - strand at 537.150 kb on - strand at 537.240 kb on + strand at 537.260 kb on + strand at 537.274 kb on - strand at 537.278 kb on - strand at 537.295 kb on + strand at 537.458 kb on + strand, within HMPREF1181_RS06010 at 537.561 kb on + strand, within HMPREF1181_RS06010 at 537.562 kb on - strand, within HMPREF1181_RS06010 at 537.564 kb on - strand, within HMPREF1181_RS06010 at 537.564 kb on - strand, within HMPREF1181_RS06010 at 537.578 kb on - strand, within HMPREF1181_RS06010 at 537.578 kb on - strand, within HMPREF1181_RS06010 at 537.580 kb on - strand, within HMPREF1181_RS06010 at 537.651 kb on + strand, within HMPREF1181_RS06010 at 537.651 kb on + strand, within HMPREF1181_RS06010 at 537.706 kb on - strand, within HMPREF1181_RS06010 at 537.709 kb on - strand, within HMPREF1181_RS06010 at 537.716 kb on + strand, within HMPREF1181_RS06010 at 537.716 kb on + strand, within HMPREF1181_RS06010 at 537.830 kb on - strand, within HMPREF1181_RS06010 at 537.831 kb on + strand, within HMPREF1181_RS06010 at 537.831 kb on + strand, within HMPREF1181_RS06010 at 537.831 kb on + strand, within HMPREF1181_RS06010 at 537.832 kb on - strand, within HMPREF1181_RS06010 at 537.834 kb on + strand, within HMPREF1181_RS06010 at 537.835 kb on - strand, within HMPREF1181_RS06010 at 537.840 kb on - strand, within HMPREF1181_RS06010 at 537.840 kb on - strand, within HMPREF1181_RS06010 at 537.842 kb on - strand, within HMPREF1181_RS06010 at 537.969 kb on - strand, within HMPREF1181_RS06010 at 537.969 kb on - strand, within HMPREF1181_RS06010 at 537.995 kb on + strand, within HMPREF1181_RS06010 at 537.995 kb on + strand, within HMPREF1181_RS06010 at 537.996 kb on - strand, within HMPREF1181_RS06010 at 538.065 kb on + strand, within HMPREF1181_RS06010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 535,172 - HMPREF1181_RS06000 0.60 -0.0 535,262 - HMPREF1181_RS06000 0.64 -2.2 535,465 + HMPREF1181_RS06000 0.73 -0.4 535,481 + HMPREF1181_RS06000 0.73 +0.6 535,482 - HMPREF1181_RS06000 0.73 -1.4 535,587 + HMPREF1181_RS06000 0.78 +0.5 535,588 - HMPREF1181_RS06000 0.78 -0.5 535,663 - HMPREF1181_RS06000 0.81 -2.3 535,686 - HMPREF1181_RS06000 0.82 -1.3 535,686 - HMPREF1181_RS06000 0.82 -0.7 535,737 - HMPREF1181_RS06000 0.85 -2.9 535,886 + +0.9 535,887 - +0.0 535,977 + -2.3 536,065 + -0.2 536,129 - -2.6 536,202 + -0.8 536,203 - -3.0 536,255 + HMPREF1181_RS06005 0.14 -1.4 536,255 + HMPREF1181_RS06005 0.14 -0.6 536,260 + HMPREF1181_RS06005 0.15 -1.5 536,380 - HMPREF1181_RS06005 0.27 -0.9 536,484 - HMPREF1181_RS06005 0.38 +0.4 536,576 - HMPREF1181_RS06005 0.47 -2.9 536,576 - HMPREF1181_RS06005 0.47 -0.9 536,662 + HMPREF1181_RS06005 0.56 -1.0 536,704 + HMPREF1181_RS06005 0.60 -1.6 536,754 + HMPREF1181_RS06005 0.65 -1.6 536,797 - HMPREF1181_RS06005 0.69 +0.2 536,908 + HMPREF1181_RS06005 0.81 -0.1 537,036 - +0.7 537,085 + -0.3 537,092 - -2.8 537,112 - -0.5 537,141 + +0.7 537,142 - -0.3 537,145 + +0.4 537,148 - -0.4 537,150 - -0.6 537,240 + +0.8 537,260 + -1.4 537,274 - -3.4 537,278 - -0.5 537,295 + +0.8 537,458 + HMPREF1181_RS06010 0.17 +0.0 537,561 + HMPREF1181_RS06010 0.24 +1.0 537,562 - HMPREF1181_RS06010 0.24 -1.2 537,564 - HMPREF1181_RS06010 0.25 -2.6 537,564 - HMPREF1181_RS06010 0.25 -0.4 537,578 - HMPREF1181_RS06010 0.26 +0.5 537,578 - HMPREF1181_RS06010 0.26 -1.9 537,580 - HMPREF1181_RS06010 0.26 -2.4 537,651 + HMPREF1181_RS06010 0.31 +0.6 537,651 + HMPREF1181_RS06010 0.31 +1.1 537,706 - HMPREF1181_RS06010 0.35 -0.3 537,709 - HMPREF1181_RS06010 0.36 +0.9 537,716 + HMPREF1181_RS06010 0.36 +0.6 537,716 + HMPREF1181_RS06010 0.36 +0.7 537,830 - HMPREF1181_RS06010 0.45 -1.2 537,831 + HMPREF1181_RS06010 0.45 +0.2 537,831 + HMPREF1181_RS06010 0.45 -1.9 537,831 + HMPREF1181_RS06010 0.45 +0.3 537,832 - HMPREF1181_RS06010 0.45 -1.3 537,834 + HMPREF1181_RS06010 0.45 +0.6 537,835 - HMPREF1181_RS06010 0.45 -3.0 537,840 - HMPREF1181_RS06010 0.46 +0.4 537,840 - HMPREF1181_RS06010 0.46 -2.9 537,842 - HMPREF1181_RS06010 0.46 -3.6 537,969 - HMPREF1181_RS06010 0.55 +0.6 537,969 - HMPREF1181_RS06010 0.55 -1.7 537,995 + HMPREF1181_RS06010 0.57 +0.9 537,995 + HMPREF1181_RS06010 0.57 +0.6 537,996 - HMPREF1181_RS06010 0.57 +0.1 538,065 + HMPREF1181_RS06010 0.63 -0.6
Or see this region's nucleotide sequence