Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04045 and HMPREF1181_RS04050 are separated by 292 nucleotides HMPREF1181_RS04050 and HMPREF1181_RS04055 are separated by 339 nucleotides HMPREF1181_RS04055 and HMPREF1181_RS04060 are separated by 13 nucleotides
HMPREF1181_RS04045: HMPREF1181_RS04045 - CPBP family intramembrane metalloprotease, at 48,519 to 49,373
_RS04045
HMPREF1181_RS04050: HMPREF1181_RS04050 - ATP-binding cassette domain-containing protein, at 49,666 to 51,282
_RS04050
HMPREF1181_RS04055: HMPREF1181_RS04055 - nucleotide exchange factor GrpE, at 51,622 to 52,242
_RS04055
HMPREF1181_RS04060: HMPREF1181_RS04060 - molecular chaperone DnaJ, at 52,256 to 53,437
_RS04060
Position (kb) 49
50
51
52 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 48.681 kb on + strand, within HMPREF1181_RS04045 at 48.682 kb on - strand, within HMPREF1181_RS04045 at 48.719 kb on - strand, within HMPREF1181_RS04045 at 48.737 kb on - strand, within HMPREF1181_RS04045 at 48.817 kb on + strand, within HMPREF1181_RS04045 at 48.818 kb on - strand, within HMPREF1181_RS04045 at 48.857 kb on - strand, within HMPREF1181_RS04045 at 48.928 kb on + strand, within HMPREF1181_RS04045 at 48.928 kb on + strand, within HMPREF1181_RS04045 at 48.929 kb on - strand, within HMPREF1181_RS04045 at 49.010 kb on + strand, within HMPREF1181_RS04045 at 49.058 kb on + strand, within HMPREF1181_RS04045 at 49.058 kb on + strand, within HMPREF1181_RS04045 at 49.060 kb on + strand, within HMPREF1181_RS04045 at 49.060 kb on + strand, within HMPREF1181_RS04045 at 49.100 kb on - strand, within HMPREF1181_RS04045 at 49.131 kb on + strand, within HMPREF1181_RS04045 at 49.132 kb on - strand, within HMPREF1181_RS04045 at 49.133 kb on + strand, within HMPREF1181_RS04045 at 49.134 kb on - strand, within HMPREF1181_RS04045 at 49.135 kb on + strand, within HMPREF1181_RS04045 at 49.135 kb on + strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.137 kb on + strand, within HMPREF1181_RS04045 at 49.138 kb on - strand, within HMPREF1181_RS04045 at 49.138 kb on - strand, within HMPREF1181_RS04045 at 49.168 kb on + strand, within HMPREF1181_RS04045 at 49.168 kb on + strand, within HMPREF1181_RS04045 at 49.277 kb on - strand, within HMPREF1181_RS04045 at 49.310 kb on - strand at 49.310 kb on - strand at 49.472 kb on + strand at 49.522 kb on + strand at 49.523 kb on - strand at 49.525 kb on - strand at 49.542 kb on + strand at 49.543 kb on - strand at 49.543 kb on - strand at 49.560 kb on + strand at 49.595 kb on + strand at 49.601 kb on - strand at 49.604 kb on - strand at 49.604 kb on - strand at 49.604 kb on - strand at 49.607 kb on - strand at 49.671 kb on + strand at 49.671 kb on + strand at 49.672 kb on - strand at 49.718 kb on - strand at 49.972 kb on + strand, within HMPREF1181_RS04050 at 50.014 kb on - strand, within HMPREF1181_RS04050 at 50.034 kb on + strand, within HMPREF1181_RS04050 at 50.034 kb on + strand, within HMPREF1181_RS04050 at 50.035 kb on - strand, within HMPREF1181_RS04050 at 50.038 kb on + strand, within HMPREF1181_RS04050 at 50.038 kb on + strand, within HMPREF1181_RS04050 at 50.038 kb on + strand, within HMPREF1181_RS04050 at 50.094 kb on + strand, within HMPREF1181_RS04050 at 50.123 kb on + strand, within HMPREF1181_RS04050 at 50.124 kb on - strand, within HMPREF1181_RS04050 at 50.124 kb on - strand, within HMPREF1181_RS04050 at 50.175 kb on + strand, within HMPREF1181_RS04050 at 50.175 kb on + strand, within HMPREF1181_RS04050 at 50.176 kb on - strand, within HMPREF1181_RS04050 at 50.176 kb on - strand, within HMPREF1181_RS04050 at 50.574 kb on - strand, within HMPREF1181_RS04050 at 50.574 kb on - strand, within HMPREF1181_RS04050 at 50.694 kb on - strand, within HMPREF1181_RS04050 at 50.711 kb on - strand, within HMPREF1181_RS04050 at 50.771 kb on + strand, within HMPREF1181_RS04050 at 50.772 kb on - strand, within HMPREF1181_RS04050 at 50.834 kb on + strand, within HMPREF1181_RS04050 at 50.834 kb on + strand, within HMPREF1181_RS04050 at 50.835 kb on - strand, within HMPREF1181_RS04050 at 50.975 kb on + strand, within HMPREF1181_RS04050 at 50.997 kb on + strand, within HMPREF1181_RS04050 at 51.108 kb on + strand, within HMPREF1181_RS04050 at 51.109 kb on - strand, within HMPREF1181_RS04050 at 51.109 kb on - strand, within HMPREF1181_RS04050 at 51.112 kb on - strand, within HMPREF1181_RS04050 at 51.144 kb on + strand at 51.144 kb on + strand at 51.147 kb on + strand at 51.188 kb on - strand at 51.190 kb on - strand at 51.190 kb on - strand at 51.190 kb on - strand at 51.224 kb on - strand at 51.246 kb on + strand at 51.262 kb on + strand at 51.277 kb on - strand at 51.287 kb on - strand at 51.301 kb on - strand at 51.301 kb on - strand at 51.308 kb on - strand at 51.308 kb on - strand at 51.311 kb on - strand at 51.311 kb on - strand at 51.311 kb on - strand at 51.328 kb on + strand at 51.330 kb on + strand at 51.365 kb on - strand at 51.383 kb on - strand at 51.408 kb on - strand at 51.462 kb on - strand at 51.462 kb on - strand at 51.467 kb on - strand at 51.491 kb on + strand at 51.492 kb on - strand at 51.505 kb on + strand at 51.523 kb on + strand at 51.598 kb on + strand at 51.601 kb on + strand at 51.657 kb on + strand at 51.657 kb on + strand at 52.245 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 48,681 + HMPREF1181_RS04045 0.19 +0.2 48,682 - HMPREF1181_RS04045 0.19 +1.6 48,719 - HMPREF1181_RS04045 0.23 -0.3 48,737 - HMPREF1181_RS04045 0.25 +0.8 48,817 + HMPREF1181_RS04045 0.35 +1.0 48,818 - HMPREF1181_RS04045 0.35 -1.2 48,857 - HMPREF1181_RS04045 0.40 +0.8 48,928 + HMPREF1181_RS04045 0.48 -1.0 48,928 + HMPREF1181_RS04045 0.48 +1.3 48,929 - HMPREF1181_RS04045 0.48 -0.1 49,010 + HMPREF1181_RS04045 0.57 -1.4 49,058 + HMPREF1181_RS04045 0.63 -0.4 49,058 + HMPREF1181_RS04045 0.63 -0.7 49,060 + HMPREF1181_RS04045 0.63 +0.9 49,060 + HMPREF1181_RS04045 0.63 -1.3 49,100 - HMPREF1181_RS04045 0.68 +0.0 49,131 + HMPREF1181_RS04045 0.72 +0.7 49,132 - HMPREF1181_RS04045 0.72 +1.3 49,133 + HMPREF1181_RS04045 0.72 +0.1 49,134 - HMPREF1181_RS04045 0.72 -0.2 49,135 + HMPREF1181_RS04045 0.72 +1.3 49,135 + HMPREF1181_RS04045 0.72 -1.3 49,136 - HMPREF1181_RS04045 0.72 -1.5 49,136 - HMPREF1181_RS04045 0.72 -0.8 49,136 - HMPREF1181_RS04045 0.72 -1.2 49,136 - HMPREF1181_RS04045 0.72 +1.4 49,137 + HMPREF1181_RS04045 0.72 +0.3 49,138 - HMPREF1181_RS04045 0.72 -0.4 49,138 - HMPREF1181_RS04045 0.72 -0.4 49,168 + HMPREF1181_RS04045 0.76 +0.4 49,168 + HMPREF1181_RS04045 0.76 +0.6 49,277 - HMPREF1181_RS04045 0.89 -0.7 49,310 - +0.6 49,310 - -0.1 49,472 + -1.7 49,522 + -0.6 49,523 - +1.0 49,525 - +0.0 49,542 + -2.4 49,543 - +0.6 49,543 - -1.7 49,560 + +1.1 49,595 + +1.2 49,601 - +1.6 49,604 - -2.5 49,604 - +0.6 49,604 - +1.6 49,607 - +0.7 49,671 + +0.8 49,671 + +0.2 49,672 - +1.6 49,718 - +1.0 49,972 + HMPREF1181_RS04050 0.19 +0.9 50,014 - HMPREF1181_RS04050 0.22 +1.6 50,034 + HMPREF1181_RS04050 0.23 -0.3 50,034 + HMPREF1181_RS04050 0.23 -0.9 50,035 - HMPREF1181_RS04050 0.23 +1.4 50,038 + HMPREF1181_RS04050 0.23 -1.3 50,038 + HMPREF1181_RS04050 0.23 +1.1 50,038 + HMPREF1181_RS04050 0.23 -1.8 50,094 + HMPREF1181_RS04050 0.26 +0.6 50,123 + HMPREF1181_RS04050 0.28 -0.5 50,124 - HMPREF1181_RS04050 0.28 -2.1 50,124 - HMPREF1181_RS04050 0.28 +0.9 50,175 + HMPREF1181_RS04050 0.31 -0.5 50,175 + HMPREF1181_RS04050 0.31 -0.3 50,176 - HMPREF1181_RS04050 0.32 -0.8 50,176 - HMPREF1181_RS04050 0.32 +0.1 50,574 - HMPREF1181_RS04050 0.56 -0.7 50,574 - HMPREF1181_RS04050 0.56 +0.6 50,694 - HMPREF1181_RS04050 0.64 +0.8 50,711 - HMPREF1181_RS04050 0.65 -0.4 50,771 + HMPREF1181_RS04050 0.68 -1.2 50,772 - HMPREF1181_RS04050 0.68 +0.5 50,834 + HMPREF1181_RS04050 0.72 -0.8 50,834 + HMPREF1181_RS04050 0.72 +0.6 50,835 - HMPREF1181_RS04050 0.72 -1.0 50,975 + HMPREF1181_RS04050 0.81 -0.3 50,997 + HMPREF1181_RS04050 0.82 -0.4 51,108 + HMPREF1181_RS04050 0.89 -1.1 51,109 - HMPREF1181_RS04050 0.89 +0.6 51,109 - HMPREF1181_RS04050 0.89 +1.1 51,112 - HMPREF1181_RS04050 0.89 +0.2 51,144 + +0.4 51,144 + -0.1 51,147 + -1.9 51,188 - -0.3 51,190 - +1.6 51,190 - +0.2 51,190 - -1.6 51,224 - -0.7 51,246 + +0.6 51,262 + -1.6 51,277 - -0.2 51,287 - -1.1 51,301 - +1.1 51,301 - +0.9 51,308 - +0.1 51,308 - -2.2 51,311 - +1.7 51,311 - -0.5 51,311 - +0.4 51,328 + -2.5 51,330 + -0.9 51,365 - -3.1 51,383 - +0.3 51,408 - +1.3 51,462 - -0.3 51,462 - +0.9 51,467 - -0.0 51,491 + +0.9 51,492 - +1.2 51,505 + +2.0 51,523 + -0.2 51,598 + -0.9 51,601 + +0.6 51,657 + -1.3 51,657 + +0.2 52,245 + -0.7 52,253 + -2.8 52,253 + -2.7 52,253 + +0.4 52,253 + +0.2 52,253 + +0.6
Or see this region's nucleotide sequence