Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02395 and HMPREF1181_RS02400 are separated by 72 nucleotides HMPREF1181_RS02400 and HMPREF1181_RS02405 are separated by 73 nucleotides
HMPREF1181_RS02395: HMPREF1181_RS02395 - cysteine--tRNA ligase, at 603,853 to 605,328
_RS02395
HMPREF1181_RS02400: HMPREF1181_RS02400 - Cof-type HAD-IIB family hydrolase, at 605,401 to 606,222
_RS02400
HMPREF1181_RS02405: HMPREF1181_RS02405 - tRNA 2-thiouridine(34) synthase MnmA, at 606,296 to 607,348
_RS02405
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 605.392 kb on + strand at 605.420 kb on + strand at 605.421 kb on - strand at 605.429 kb on - strand at 605.429 kb on - strand at 605.441 kb on - strand at 605.537 kb on - strand, within HMPREF1181_RS02400 at 605.537 kb on - strand, within HMPREF1181_RS02400 at 605.537 kb on - strand, within HMPREF1181_RS02400 at 605.555 kb on + strand, within HMPREF1181_RS02400 at 605.635 kb on + strand, within HMPREF1181_RS02400 at 605.636 kb on - strand, within HMPREF1181_RS02400 at 605.730 kb on + strand, within HMPREF1181_RS02400 at 605.809 kb on + strand, within HMPREF1181_RS02400 at 605.843 kb on - strand, within HMPREF1181_RS02400 at 605.847 kb on - strand, within HMPREF1181_RS02400 at 605.873 kb on - strand, within HMPREF1181_RS02400 at 605.941 kb on + strand, within HMPREF1181_RS02400 at 605.941 kb on + strand, within HMPREF1181_RS02400 at 605.942 kb on - strand, within HMPREF1181_RS02400 at 605.942 kb on - strand, within HMPREF1181_RS02400 at 605.965 kb on - strand, within HMPREF1181_RS02400 at 605.967 kb on - strand, within HMPREF1181_RS02400 at 605.967 kb on - strand, within HMPREF1181_RS02400 at 605.972 kb on - strand, within HMPREF1181_RS02400 at 605.972 kb on - strand, within HMPREF1181_RS02400 at 606.010 kb on - strand, within HMPREF1181_RS02400 at 606.079 kb on - strand, within HMPREF1181_RS02400 at 606.127 kb on + strand, within HMPREF1181_RS02400 at 606.128 kb on - strand, within HMPREF1181_RS02400 at 606.284 kb on + strand at 606.285 kb on - strand at 606.316 kb on - strand at 606.435 kb on - strand, within HMPREF1181_RS02405 at 606.481 kb on + strand, within HMPREF1181_RS02405 at 606.484 kb on + strand, within HMPREF1181_RS02405 at 606.485 kb on - strand, within HMPREF1181_RS02405 at 606.488 kb on + strand, within HMPREF1181_RS02405 at 606.488 kb on + strand, within HMPREF1181_RS02405 at 606.489 kb on - strand, within HMPREF1181_RS02405 at 606.534 kb on + strand, within HMPREF1181_RS02405 at 606.535 kb on - strand, within HMPREF1181_RS02405 at 606.535 kb on - strand, within HMPREF1181_RS02405 at 606.556 kb on + strand, within HMPREF1181_RS02405 at 606.571 kb on + strand, within HMPREF1181_RS02405 at 606.664 kb on + strand, within HMPREF1181_RS02405 at 606.687 kb on - strand, within HMPREF1181_RS02405 at 606.689 kb on + strand, within HMPREF1181_RS02405 at 606.689 kb on + strand, within HMPREF1181_RS02405 at 606.690 kb on - strand, within HMPREF1181_RS02405 at 606.860 kb on - strand, within HMPREF1181_RS02405 at 606.861 kb on + strand, within HMPREF1181_RS02405 at 606.967 kb on - strand, within HMPREF1181_RS02405 at 606.967 kb on - strand, within HMPREF1181_RS02405 at 606.969 kb on + strand, within HMPREF1181_RS02405 at 606.997 kb on + strand, within HMPREF1181_RS02405 at 607.002 kb on + strand, within HMPREF1181_RS02405 at 607.003 kb on - strand, within HMPREF1181_RS02405 at 607.045 kb on - strand, within HMPREF1181_RS02405 at 607.105 kb on - strand, within HMPREF1181_RS02405 at 607.106 kb on + strand, within HMPREF1181_RS02405 at 607.142 kb on - strand, within HMPREF1181_RS02405 at 607.142 kb on - strand, within HMPREF1181_RS02405 at 607.189 kb on - strand, within HMPREF1181_RS02405 at 607.217 kb on - strand, within HMPREF1181_RS02405
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 605,392 + -2.3 605,420 + -1.9 605,421 - -0.3 605,429 - +0.3 605,429 - -2.1 605,441 - +0.8 605,537 - HMPREF1181_RS02400 0.17 +0.1 605,537 - HMPREF1181_RS02400 0.17 +0.6 605,537 - HMPREF1181_RS02400 0.17 +1.7 605,555 + HMPREF1181_RS02400 0.19 +0.4 605,635 + HMPREF1181_RS02400 0.28 +0.6 605,636 - HMPREF1181_RS02400 0.29 +0.9 605,730 + HMPREF1181_RS02400 0.40 -0.1 605,809 + HMPREF1181_RS02400 0.50 +1.3 605,843 - HMPREF1181_RS02400 0.54 -1.3 605,847 - HMPREF1181_RS02400 0.54 +0.7 605,873 - HMPREF1181_RS02400 0.57 -1.5 605,941 + HMPREF1181_RS02400 0.66 +0.3 605,941 + HMPREF1181_RS02400 0.66 -1.4 605,942 - HMPREF1181_RS02400 0.66 +0.5 605,942 - HMPREF1181_RS02400 0.66 -2.7 605,965 - HMPREF1181_RS02400 0.69 -0.3 605,967 - HMPREF1181_RS02400 0.69 +0.0 605,967 - HMPREF1181_RS02400 0.69 +0.8 605,972 - HMPREF1181_RS02400 0.69 +0.5 605,972 - HMPREF1181_RS02400 0.69 +1.6 606,010 - HMPREF1181_RS02400 0.74 -0.8 606,079 - HMPREF1181_RS02400 0.82 +1.2 606,127 + HMPREF1181_RS02400 0.88 -0.3 606,128 - HMPREF1181_RS02400 0.88 +0.5 606,284 + +0.5 606,285 - -0.1 606,316 - +0.2 606,435 - HMPREF1181_RS02405 0.13 -1.7 606,481 + HMPREF1181_RS02405 0.18 -1.8 606,484 + HMPREF1181_RS02405 0.18 -1.3 606,485 - HMPREF1181_RS02405 0.18 +0.6 606,488 + HMPREF1181_RS02405 0.18 +0.4 606,488 + HMPREF1181_RS02405 0.18 -0.6 606,489 - HMPREF1181_RS02405 0.18 -0.1 606,534 + HMPREF1181_RS02405 0.23 -1.6 606,535 - HMPREF1181_RS02405 0.23 -1.2 606,535 - HMPREF1181_RS02405 0.23 -2.0 606,556 + HMPREF1181_RS02405 0.25 +1.3 606,571 + HMPREF1181_RS02405 0.26 -1.1 606,664 + HMPREF1181_RS02405 0.35 +0.3 606,687 - HMPREF1181_RS02405 0.37 -2.0 606,689 + HMPREF1181_RS02405 0.37 -0.3 606,689 + HMPREF1181_RS02405 0.37 -1.8 606,690 - HMPREF1181_RS02405 0.37 -2.7 606,860 - HMPREF1181_RS02405 0.54 +0.6 606,861 + HMPREF1181_RS02405 0.54 +1.2 606,967 - HMPREF1181_RS02405 0.64 +0.5 606,967 - HMPREF1181_RS02405 0.64 -1.2 606,969 + HMPREF1181_RS02405 0.64 +0.6 606,997 + HMPREF1181_RS02405 0.67 +0.0 607,002 + HMPREF1181_RS02405 0.67 +0.6 607,003 - HMPREF1181_RS02405 0.67 +0.4 607,045 - HMPREF1181_RS02405 0.71 +1.5 607,105 - HMPREF1181_RS02405 0.77 +0.6 607,106 + HMPREF1181_RS02405 0.77 -0.5 607,142 - HMPREF1181_RS02405 0.80 -1.7 607,142 - HMPREF1181_RS02405 0.80 -1.2 607,189 - HMPREF1181_RS02405 0.85 -0.2 607,217 - HMPREF1181_RS02405 0.87 -3.0
Or see this region's nucleotide sequence