Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS01710 and HMPREF1181_RS01715 overlap by 1 nucleotides HMPREF1181_RS01715 and HMPREF1181_RS01720 are separated by 2 nucleotides HMPREF1181_RS01720 and HMPREF1181_RS01725 are separated by 65 nucleotides HMPREF1181_RS01725 and HMPREF1181_RS01730 are separated by 22 nucleotides
HMPREF1181_RS01710: HMPREF1181_RS01710 - tRNA pseudouridine(55) synthase TruB, at 412,488 to 413,198
_RS01710
HMPREF1181_RS01715: HMPREF1181_RS01715 - undecaprenyl-diphosphate phosphatase, at 413,198 to 414,052
_RS01715
HMPREF1181_RS01720: HMPREF1181_RS01720 - DUF3098 domain-containing protein, at 414,055 to 414,297
_RS01720
HMPREF1181_RS01725: HMPREF1181_RS01725 - FtsX-like permease family protein, at 414,363 to 415,244
_RS01725
HMPREF1181_RS01730: HMPREF1181_RS01730 - class I SAM-dependent methyltransferase, at 415,267 to 416,184
_RS01730
Position (kb) 414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 413.074 kb on - strand, within HMPREF1181_RS01710 at 414.057 kb on - strand at 414.304 kb on - strand at 414.326 kb on - strand at 414.371 kb on - strand at 414.374 kb on - strand at 414.847 kb on - strand, within HMPREF1181_RS01725 at 414.990 kb on - strand, within HMPREF1181_RS01725 at 414.992 kb on - strand, within HMPREF1181_RS01725 at 414.992 kb on - strand, within HMPREF1181_RS01725 at 415.045 kb on - strand, within HMPREF1181_RS01725 at 415.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 413,074 - HMPREF1181_RS01710 0.82 -1.1 414,057 - -2.8 414,304 - -3.7 414,326 - -0.9 414,371 - -3.6 414,374 - -1.8 414,847 - HMPREF1181_RS01725 0.55 -0.2 414,990 - HMPREF1181_RS01725 0.71 -1.1 414,992 - HMPREF1181_RS01725 0.71 -2.0 414,992 - HMPREF1181_RS01725 0.71 +0.6 415,045 - HMPREF1181_RS01725 0.77 -2.8 415,180 - -1.8
Or see this region's nucleotide sequence