Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF989 and GFF990 overlap by 4 nucleotides GFF990 and GFF991 overlap by 4 nucleotides GFF991 and GFF992 are separated by 24 nucleotides GFF992 and GFF993 are separated by 13 nucleotides
GFF989 - metallo-beta-lactamase family protein, at 729,259 to 730,326
GFF989
GFF990 - Phenylacetic acid degradation-related protein, at 730,323 to 730,799
GFF990
GFF991 - hypothetical protein, at 730,796 to 731,230
GFF991
GFF992 - Citronellol and citronellal dehydrogenase, at 731,255 to 732,136
GFF992
GFF993 - Transglutaminase-like domain, at 732,150 to 732,845
GFF993
Position (kb) 730
731
732 Strain fitness (log2 ratio) -2
-1
0
1 at 730.142 kb on - strand, within GFF989 at 730.172 kb on - strand, within GFF989 at 730.396 kb on - strand, within GFF990 at 730.573 kb on + strand, within GFF990 at 730.609 kb on - strand, within GFF990 at 730.660 kb on - strand, within GFF990 at 730.701 kb on + strand, within GFF990 at 730.746 kb on + strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.755 kb on - strand at 730.772 kb on - strand at 731.019 kb on - strand, within GFF991 at 731.079 kb on - strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.109 kb on - strand, within GFF991 at 731.266 kb on + strand at 731.266 kb on + strand at 731.267 kb on - strand at 731.374 kb on - strand, within GFF992 at 731.866 kb on + strand, within GFF992 at 731.866 kb on - strand, within GFF992 at 731.870 kb on + strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 732.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 730,142 - GFF989 0.83 -0.2 730,172 - GFF989 0.85 +1.5 730,396 - GFF990 0.15 +0.6 730,573 + GFF990 0.52 -0.2 730,609 - GFF990 0.60 +0.6 730,660 - GFF990 0.71 +0.2 730,701 + GFF990 0.79 +0.7 730,746 + GFF990 0.89 -0.6 730,747 - GFF990 0.89 -0.4 730,747 - GFF990 0.89 +0.2 730,747 - GFF990 0.89 +0.5 730,747 - GFF990 0.89 -0.3 730,755 - +0.4 730,772 - -0.4 731,019 - GFF991 0.51 +0.1 731,079 - GFF991 0.65 -0.7 731,108 + GFF991 0.72 +0.7 731,108 + GFF991 0.72 -1.9 731,108 + GFF991 0.72 -0.9 731,109 - GFF991 0.72 -0.6 731,266 + -0.2 731,266 + +1.1 731,267 - -1.1 731,374 - GFF992 0.13 +0.8 731,866 + GFF992 0.69 +0.9 731,866 - GFF992 0.69 +0.7 731,870 + GFF992 0.70 +0.0 731,871 - GFF992 0.70 -0.4 731,871 - GFF992 0.70 -0.3 731,871 - GFF992 0.70 +0.0 732,149 + +0.4
Or see this region's nucleotide sequence