Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF809 and GFF810 are separated by 4 nucleotides GFF810 and GFF811 are separated by 106 nucleotides GFF811 and GFF812 are separated by 12 nucleotides GFF812 and GFF813 are separated by 14 nucleotides
GFF809 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 504,409 to 505,116
GFF809
GFF810 - FIG00932425: hypothetical protein, at 505,121 to 505,912
GFF810
GFF811 - NADH dehydrogenase-like protein / Selenide,water dikinase (EC 2.7.9.3), at 506,019 to 507,161
GFF811
GFF812 - hypothetical protein, at 507,174 to 507,476
GFF812
GFF813 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 507,491 to 508,330
GFF813
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1 at 505.122 kb on + strand at 505.123 kb on - strand at 505.209 kb on + strand, within GFF810 at 505.210 kb on - strand, within GFF810 at 505.210 kb on - strand, within GFF810 at 505.210 kb on - strand, within GFF810 at 505.489 kb on - strand, within GFF810 at 505.540 kb on - strand, within GFF810 at 505.596 kb on + strand, within GFF810 at 505.596 kb on + strand, within GFF810 at 505.596 kb on + strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.741 kb on - strand, within GFF810 at 505.741 kb on - strand, within GFF810 at 505.782 kb on + strand, within GFF810 at 505.782 kb on + strand, within GFF810 at 505.782 kb on + strand, within GFF810 at 505.783 kb on - strand, within GFF810 at 505.956 kb on - strand at 506.469 kb on + strand, within GFF811 at 506.470 kb on - strand, within GFF811 at 506.470 kb on - strand, within GFF811 at 506.837 kb on - strand, within GFF811 at 507.136 kb on + strand at 507.274 kb on + strand, within GFF812 at 507.275 kb on - strand, within GFF812 at 507.275 kb on - strand, within GFF812 at 507.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 505,122 + +0.2 505,123 - -1.0 505,209 + GFF810 0.11 -0.4 505,210 - GFF810 0.11 -0.8 505,210 - GFF810 0.11 -0.3 505,210 - GFF810 0.11 -0.3 505,489 - GFF810 0.46 -0.1 505,540 - GFF810 0.53 -0.1 505,596 + GFF810 0.60 +0.9 505,596 + GFF810 0.60 -0.1 505,596 + GFF810 0.60 +0.3 505,597 - GFF810 0.60 +0.7 505,597 - GFF810 0.60 -0.7 505,597 - GFF810 0.60 +0.5 505,597 - GFF810 0.60 +0.3 505,741 - GFF810 0.78 -0.1 505,741 - GFF810 0.78 +0.7 505,782 + GFF810 0.83 +0.3 505,782 + GFF810 0.83 -1.4 505,782 + GFF810 0.83 +0.1 505,783 - GFF810 0.84 -0.3 505,956 - +0.4 506,469 + GFF811 0.39 +1.2 506,470 - GFF811 0.39 +0.1 506,470 - GFF811 0.39 -0.5 506,837 - GFF811 0.72 -2.1 507,136 + -1.4 507,274 + GFF812 0.33 -0.4 507,275 - GFF812 0.33 +0.3 507,275 - GFF812 0.33 -0.3 507,455 + +0.4
Or see this region's nucleotide sequence