Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF690 and GFF691 are separated by 2 nucleotides GFF691 and GFF692 overlap by 4 nucleotides GFF692 and GFF693 are separated by 70 nucleotides GFF693 and GFF694 are separated by 88 nucleotides GFF694 and GFF695 are separated by 39 nucleotides
GFF690 - hypothetical protein, at 372,474 to 372,599
GFF690
GFF691 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 372,602 to 373,213
GFF691
GFF692 - Probable transmembrane protein, at 373,210 to 373,422
GFF692
GFF693 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 373,493 to 374,374
GFF693
GFF694 - hypothetical protein, at 374,463 to 374,696
GFF694
GFF695 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 374,736 to 375,476
GFF695
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.905 kb on + strand, within GFF691 at 372.905 kb on + strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 373.019 kb on + strand, within GFF691 at 373.019 kb on + strand, within GFF691 at 373.112 kb on + strand, within GFF691 at 373.113 kb on + strand, within GFF691 at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.462 kb on - strand at 373.462 kb on - strand at 373.462 kb on - strand at 373.465 kb on + strand at 373.465 kb on + strand at 373.465 kb on + strand at 373.466 kb on - strand at 373.466 kb on - strand at 373.523 kb on + strand at 373.524 kb on - strand at 373.526 kb on + strand at 373.526 kb on + strand at 373.527 kb on - strand at 373.527 kb on - strand at 373.718 kb on + strand, within GFF693 at 373.718 kb on + strand, within GFF693 at 373.718 kb on + strand, within GFF693 at 374.123 kb on + strand, within GFF693 at 374.123 kb on + strand, within GFF693 at 374.136 kb on - strand, within GFF693 at 374.136 kb on - strand, within GFF693 at 374.315 kb on + strand at 374.316 kb on - strand at 374.351 kb on + strand at 374.352 kb on - strand at 374.352 kb on - strand at 374.352 kb on - strand at 374.352 kb on - strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.364 kb on - strand at 374.364 kb on - strand at 374.373 kb on - strand at 374.464 kb on + strand at 374.509 kb on + strand, within GFF694 at 374.509 kb on + strand, within GFF694 at 374.632 kb on + strand, within GFF694 at 374.632 kb on + strand, within GFF694 at 374.632 kb on + strand, within GFF694 at 374.632 kb on + strand, within GFF694 at 374.632 kb on + strand, within GFF694 at 374.633 kb on - strand, within GFF694 at 374.633 kb on - strand, within GFF694 at 374.633 kb on - strand, within GFF694 at 374.633 kb on - strand, within GFF694 at 374.689 kb on + strand at 374.689 kb on + strand at 374.689 kb on + strand at 374.690 kb on - strand at 374.690 kb on - strand at 374.690 kb on - strand at 375.187 kb on + strand, within GFF695 at 375.187 kb on + strand, within GFF695 at 375.187 kb on + strand, within GFF695 at 375.187 kb on + strand, within GFF695 at 375.188 kb on - strand, within GFF695 at 375.188 kb on - strand, within GFF695 at 375.188 kb on - strand, within GFF695 at 375.188 kb on - strand, within GFF695 at 375.188 kb on - strand, within GFF695 at 375.188 kb on - strand, within GFF695 at 375.190 kb on - strand, within GFF695 at 375.230 kb on + strand, within GFF695 at 375.230 kb on + strand, within GFF695 at 375.366 kb on + strand, within GFF695 at 375.366 kb on + strand, within GFF695
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 372,905 + GFF691 0.50 +0.4 372,905 + GFF691 0.50 -2.1 372,906 - GFF691 0.50 -0.1 372,906 - GFF691 0.50 -2.5 372,906 - GFF691 0.50 -2.4 373,019 + GFF691 0.68 -1.7 373,019 + GFF691 0.68 -0.1 373,112 + GFF691 0.83 -2.1 373,113 + GFF691 0.83 -3.0 373,209 + -0.1 373,209 + -0.2 373,209 + -0.0 373,209 + +0.1 373,209 + +0.2 373,209 + +0.6 373,209 + -0.2 373,209 + +0.5 373,209 + -1.2 373,209 + -0.2 373,209 + -0.1 373,210 - +0.6 373,210 - -0.0 373,210 - -0.1 373,210 - -0.1 373,461 + -0.6 373,461 + -0.6 373,461 + +1.2 373,461 + +1.9 373,462 - -1.1 373,462 - -1.0 373,462 - -1.8 373,465 + -1.4 373,465 + -0.2 373,465 + -0.8 373,466 - -0.0 373,466 - -1.6 373,523 + -2.4 373,524 - -0.1 373,526 + -1.7 373,526 + -1.2 373,527 - -1.9 373,527 - -1.9 373,718 + GFF693 0.26 -2.7 373,718 + GFF693 0.26 -1.4 373,718 + GFF693 0.26 -1.6 374,123 + GFF693 0.71 -1.6 374,123 + GFF693 0.71 -1.4 374,136 - GFF693 0.73 +0.9 374,136 - GFF693 0.73 +0.9 374,315 + -0.1 374,316 - -0.7 374,351 + -1.6 374,352 - -0.1 374,352 - -1.4 374,352 - -2.0 374,352 - -1.4 374,363 + +0.0 374,363 + -0.6 374,364 - +0.2 374,364 - -0.3 374,373 - +0.0 374,464 + -0.1 374,509 + GFF694 0.20 -0.1 374,509 + GFF694 0.20 -0.5 374,632 + GFF694 0.72 +1.3 374,632 + GFF694 0.72 +0.5 374,632 + GFF694 0.72 +0.0 374,632 + GFF694 0.72 -0.5 374,632 + GFF694 0.72 -0.1 374,633 - GFF694 0.73 +0.4 374,633 - GFF694 0.73 +0.4 374,633 - GFF694 0.73 -0.1 374,633 - GFF694 0.73 -0.5 374,689 + -0.3 374,689 + -0.4 374,689 + +0.9 374,690 - +0.3 374,690 - -0.3 374,690 - +0.5 375,187 + GFF695 0.61 -2.2 375,187 + GFF695 0.61 -1.4 375,187 + GFF695 0.61 -0.5 375,187 + GFF695 0.61 -1.8 375,188 - GFF695 0.61 -1.1 375,188 - GFF695 0.61 +0.2 375,188 - GFF695 0.61 -1.9 375,188 - GFF695 0.61 -0.9 375,188 - GFF695 0.61 -0.2 375,188 - GFF695 0.61 -0.7 375,190 - GFF695 0.61 -1.1 375,230 + GFF695 0.67 -0.5 375,230 + GFF695 0.67 +0.9 375,366 + GFF695 0.85 +0.2 375,366 + GFF695 0.85 -0.5
Or see this region's nucleotide sequence