Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF688 and GFF689 are separated by 40 nucleotides GFF689 and GFF690 are separated by 13 nucleotides GFF690 and GFF691 are separated by 2 nucleotides GFF691 and GFF692 overlap by 4 nucleotides
GFF688 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 369,592 to 370,797
GFF688
GFF689 - Cytochrome c oxidase polypeptide I (EC 1.9.3.1), at 370,838 to 372,460
GFF689
GFF690 - hypothetical protein, at 372,474 to 372,599
GFF690
GFF691 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 372,602 to 373,213
GFF691
GFF692 - Probable transmembrane protein, at 373,210 to 373,422
GFF692
Position (kb) 370
371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 369.856 kb on + strand, within GFF688 at 369.857 kb on - strand, within GFF688 at 369.857 kb on - strand, within GFF688 at 369.857 kb on - strand, within GFF688 at 370.063 kb on + strand, within GFF688 at 370.069 kb on + strand, within GFF688 at 370.069 kb on + strand, within GFF688 at 370.070 kb on - strand, within GFF688 at 370.070 kb on - strand, within GFF688 at 370.168 kb on + strand, within GFF688 at 370.169 kb on - strand, within GFF688 at 370.346 kb on - strand, within GFF688 at 370.384 kb on + strand, within GFF688 at 370.385 kb on - strand, within GFF688 at 370.385 kb on - strand, within GFF688 at 370.423 kb on + strand, within GFF688 at 370.423 kb on + strand, within GFF688 at 370.424 kb on - strand, within GFF688 at 370.424 kb on - strand, within GFF688 at 370.528 kb on + strand, within GFF688 at 370.528 kb on + strand, within GFF688 at 370.528 kb on + strand, within GFF688 at 370.815 kb on - strand at 370.922 kb on + strand at 370.955 kb on + strand at 370.956 kb on - strand at 370.956 kb on - strand at 370.956 kb on - strand at 370.956 kb on - strand at 371.583 kb on - strand, within GFF689 at 371.583 kb on - strand, within GFF689 at 371.621 kb on + strand, within GFF689 at 371.621 kb on + strand, within GFF689 at 371.621 kb on + strand, within GFF689 at 371.622 kb on - strand, within GFF689 at 371.711 kb on + strand, within GFF689 at 371.712 kb on - strand, within GFF689 at 371.808 kb on - strand, within GFF689 at 371.999 kb on + strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.000 kb on - strand, within GFF689 at 372.002 kb on + strand, within GFF689 at 372.003 kb on - strand, within GFF689 at 372.023 kb on + strand, within GFF689 at 372.068 kb on + strand, within GFF689 at 372.068 kb on + strand, within GFF689 at 372.069 kb on - strand, within GFF689 at 372.072 kb on - strand, within GFF689 at 372.101 kb on + strand, within GFF689 at 372.102 kb on - strand, within GFF689 at 372.288 kb on - strand, within GFF689 at 372.288 kb on - strand, within GFF689 at 372.905 kb on + strand, within GFF691 at 372.905 kb on + strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 372.906 kb on - strand, within GFF691 at 373.019 kb on + strand, within GFF691 at 373.019 kb on + strand, within GFF691 at 373.112 kb on + strand, within GFF691 at 373.113 kb on + strand, within GFF691 at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.209 kb on + strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.210 kb on - strand at 373.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 369,856 + GFF688 0.22 -2.1 369,857 - GFF688 0.22 -1.9 369,857 - GFF688 0.22 -3.7 369,857 - GFF688 0.22 -1.3 370,063 + GFF688 0.39 -2.0 370,069 + GFF688 0.40 +0.9 370,069 + GFF688 0.40 -1.3 370,070 - GFF688 0.40 -1.4 370,070 - GFF688 0.40 -1.4 370,168 + GFF688 0.48 -0.1 370,169 - GFF688 0.48 -0.9 370,346 - GFF688 0.63 +0.2 370,384 + GFF688 0.66 -1.7 370,385 - GFF688 0.66 -2.0 370,385 - GFF688 0.66 -1.4 370,423 + GFF688 0.69 -2.4 370,423 + GFF688 0.69 -1.6 370,424 - GFF688 0.69 -0.1 370,424 - GFF688 0.69 -1.0 370,528 + GFF688 0.78 -0.1 370,528 + GFF688 0.78 +0.1 370,528 + GFF688 0.78 -0.5 370,815 - -1.0 370,922 + -1.6 370,955 + -1.9 370,956 - -1.2 370,956 - -1.1 370,956 - -1.6 370,956 - -1.1 371,583 - GFF689 0.46 -2.2 371,583 - GFF689 0.46 -0.6 371,621 + GFF689 0.48 -1.6 371,621 + GFF689 0.48 -1.1 371,621 + GFF689 0.48 -0.1 371,622 - GFF689 0.48 -0.1 371,711 + GFF689 0.54 -0.9 371,712 - GFF689 0.54 -0.3 371,808 - GFF689 0.60 -1.6 371,999 + GFF689 0.72 -1.1 372,000 - GFF689 0.72 -2.6 372,000 - GFF689 0.72 -1.0 372,000 - GFF689 0.72 -2.9 372,000 - GFF689 0.72 -3.1 372,000 - GFF689 0.72 -1.5 372,002 + GFF689 0.72 -0.6 372,003 - GFF689 0.72 -1.4 372,023 + GFF689 0.73 -0.1 372,068 + GFF689 0.76 -0.9 372,068 + GFF689 0.76 -1.1 372,069 - GFF689 0.76 +0.5 372,072 - GFF689 0.76 -1.8 372,101 + GFF689 0.78 -1.5 372,102 - GFF689 0.78 -1.1 372,288 - GFF689 0.89 -2.6 372,288 - GFF689 0.89 -1.5 372,905 + GFF691 0.50 +0.4 372,905 + GFF691 0.50 -2.1 372,906 - GFF691 0.50 -0.1 372,906 - GFF691 0.50 -2.5 372,906 - GFF691 0.50 -2.4 373,019 + GFF691 0.68 -1.7 373,019 + GFF691 0.68 -0.1 373,112 + GFF691 0.83 -2.1 373,113 + GFF691 0.83 -3.0 373,209 + -0.1 373,209 + -0.2 373,209 + -0.0 373,209 + +0.1 373,209 + +0.2 373,209 + +0.6 373,209 + -0.2 373,209 + +0.5 373,209 + -1.2 373,209 + -0.2 373,209 + -0.1 373,210 - +0.6 373,210 - -0.0 373,210 - -0.1 373,210 - -0.1
Or see this region's nucleotide sequence