Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF666

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF664 and GFF665 are separated by 9 nucleotidesGFF665 and GFF666 are separated by 80 nucleotidesGFF666 and GFF667 are separated by 41 nucleotidesGFF667 and GFF1075 are separated by 144 nucleotidesGFF1075 and GFF668 overlap by 10 nucleotides GFF664 - FIG00932412: hypothetical protein, at 347,168 to 347,611 GFF664 GFF665 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 347,621 to 348,052 GFF665 GFF666 - Fused spore maturation proteins A and B, at 348,133 to 349,425 GFF666 GFF667 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 349,467 to 349,940 GFF667 GFF1075 - tRNA-Arg-CCT, at 350,085 to 350,156 GFF1075 GFF668 - Transcriptional regulator, LysR family, at 350,147 to 351,118 GFF668 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1at 347.158 kb on + strandat 347.158 kb on + strandat 347.159 kb on - strandat 347.298 kb on - strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.325 kb on - strand, within GFF664at 347.333 kb on + strand, within GFF664at 347.375 kb on + strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.884 kb on - strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.988 kb on + strand, within GFF665at 347.989 kb on - strand, within GFF665at 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.022 kb on - strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.158 kb on + strandat 348.158 kb on + strandat 348.976 kb on + strand, within GFF666at 348.976 kb on + strand, within GFF666at 348.977 kb on - strand, within GFF666at 348.977 kb on - strand, within GFF666at 349.036 kb on + strand, within GFF666at 349.036 kb on + strand, within GFF666at 349.037 kb on - strand, within GFF666at 349.037 kb on - strand, within GFF666at 349.297 kb on + strandat 349.297 kb on + strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.312 kb on + strandat 349.313 kb on - strandat 349.313 kb on - strandat 349.409 kb on - strandat 349.513 kb on + strandat 349.513 kb on + strandat 349.513 kb on + strandat 349.514 kb on - strandat 349.768 kb on + strand, within GFF667at 349.768 kb on + strand, within GFF667at 349.768 kb on + strand, within GFF667at 349.769 kb on - strand, within GFF667at 349.977 kb on + strandat 349.978 kb on - strandat 349.978 kb on - strandat 349.978 kb on - strandat 350.018 kb on + strandat 350.019 kb on - strandat 350.019 kb on - strandat 350.019 kb on - strandat 350.019 kb on - strandat 350.109 kb on + strand, within GFF1075at 350.109 kb on + strand, within GFF1075at 350.110 kb on - strand, within GFF1075at 350.110 kb on - strand, within GFF1075at 350.110 kb on - strand, within GFF1075at 350.114 kb on - strand, within GFF1075at 350.114 kb on - strand, within GFF1075at 350.121 kb on - strand, within GFF1075at 350.148 kb on + strandat 350.148 kb on + strandat 350.149 kb on - strandat 350.238 kb on + strandat 350.238 kb on + strandat 350.238 kb on + strandat 350.238 kb on + strandat 350.239 kb on - strandat 350.239 kb on - strandat 350.385 kb on + strand, within GFF668at 350.385 kb on + strand, within GFF668at 350.385 kb on + strand, within GFF668at 350.386 kb on - strand, within GFF668at 350.386 kb on - strand, within GFF668at 350.386 kb on - strand, within GFF668

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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347,158 + -0.1
347,158 + +0.4
347,159 - +0.0
347,298 - GFF664 0.29 -0.4
347,324 + GFF664 0.35 +0.1
347,324 + GFF664 0.35 -0.1
347,324 + GFF664 0.35 +0.0
347,325 - GFF664 0.35 +0.1
347,333 + GFF664 0.37 -0.3
347,375 + GFF664 0.47 -0.3
347,376 - GFF664 0.47 +0.3
347,376 - GFF664 0.47 -0.3
347,376 - GFF664 0.47 -0.1
347,376 - GFF664 0.47 -0.1
347,376 - GFF664 0.47 -0.9
347,540 + GFF664 0.84 +0.2
347,540 + GFF664 0.84 +0.7
347,540 + GFF664 0.84 +0.2
347,540 + GFF664 0.84 +0.9
347,540 + GFF664 0.84 -0.3
347,540 + GFF664 0.84 +0.6
347,541 - GFF664 0.84 -0.4
347,541 - GFF664 0.84 +0.1
347,883 + GFF665 0.61 -0.2
347,883 + GFF665 0.61 -0.2
347,883 + GFF665 0.61 -1.5
347,883 + GFF665 0.61 -2.2
347,883 + GFF665 0.61 -1.8
347,883 + GFF665 0.61 -0.1
347,883 + GFF665 0.61 +0.1
347,884 - GFF665 0.61 +1.2
347,946 + GFF665 0.75 +0.2
347,946 + GFF665 0.75 +0.1
347,947 - GFF665 0.75 -0.0
347,947 - GFF665 0.75 +0.7
347,988 + GFF665 0.85 +0.5
347,989 - GFF665 0.85 -1.5
348,021 + -0.1
348,021 + +0.6
348,021 + -0.1
348,021 + +0.9
348,022 - +0.5
348,030 + -0.4
348,031 - +0.1
348,031 - +0.9
348,031 - -0.4
348,031 - -0.2
348,158 + -0.3
348,158 + -0.2
348,976 + GFF666 0.65 +0.7
348,976 + GFF666 0.65 -0.0
348,977 - GFF666 0.65 +0.2
348,977 - GFF666 0.65 +0.1
349,036 + GFF666 0.70 +1.3
349,036 + GFF666 0.70 -0.2
349,037 - GFF666 0.70 +0.1
349,037 - GFF666 0.70 -1.4
349,297 + +0.2
349,297 + +0.9
349,298 - -0.6
349,298 - -0.1
349,298 - -0.1
349,298 - -0.4
349,298 - +0.9
349,298 - -0.4
349,298 - +0.0
349,312 + +0.5
349,312 + -1.1
349,312 + +0.1
349,312 + -0.3
349,312 + -1.5
349,313 - +0.7
349,313 - +1.4
349,409 - -0.0
349,513 + -0.2
349,513 + +1.4
349,513 + +0.2
349,514 - -0.4
349,768 + GFF667 0.64 -0.4
349,768 + GFF667 0.64 -0.5
349,768 + GFF667 0.64 -0.2
349,769 - GFF667 0.64 -2.5
349,977 + -0.2
349,978 - +0.6
349,978 - -0.7
349,978 - +0.2
350,018 + -0.3
350,019 - +0.2
350,019 - +0.2
350,019 - +0.7
350,019 - -0.3
350,109 + GFF1075 0.33 -0.9
350,109 + GFF1075 0.33 -0.6
350,110 - GFF1075 0.35 -1.6
350,110 - GFF1075 0.35 +0.2
350,110 - GFF1075 0.35 -1.2
350,114 - GFF1075 0.40 -2.5
350,114 - GFF1075 0.40 -0.6
350,121 - GFF1075 0.50 -0.6
350,148 + -1.1
350,148 + -2.4
350,149 - -1.1
350,238 + +0.1
350,238 + +0.1
350,238 + +0.6
350,238 + +0.5
350,239 - -0.2
350,239 - +0.4
350,385 + GFF668 0.24 -0.7
350,385 + GFF668 0.24 -0.5
350,385 + GFF668 0.24 +1.3
350,386 - GFF668 0.25 -0.8
350,386 - GFF668 0.25 -0.1
350,386 - GFF668 0.25 -0.5

Or see this region's nucleotide sequence