Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5542

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,548,689	+				+0.1
2,548,689	+				-0.5
2,548,689	+				-0.9
2,548,690	-				+0.1
2,548,690	-				+0.1
2,548,859	+				+0.3
2,548,859	+				+1.0
2,548,859	+				+0.3
2,548,859	+				-0.3
2,548,859	+				-0.3
2,548,859	+				-0.5
2,548,859	+				-0.1
2,548,859	+				-0.1
2,548,859	+				+0.3
2,548,860	-				+0.5
2,548,860	-				-0.1
2,548,860	-				+0.5
2,548,900	+				-0.2
2,548,965	+				+0.8
2,548,966	-				+0.1
2,548,966	-				+0.1
2,549,066	+				-0.7
2,549,066	+				+0.5
2,549,066	+				-0.3
2,549,066	+				-0.3
2,549,066	+				+0.2
2,549,067	-				-0.4
2,549,067	-				-0.3
2,549,067	-				-0.1
2,549,205	+				+0.7
2,549,318	+				-0.0
2,549,353	-				+0.4
2,549,392	+				-0.3
2,549,392	+				+0.1
2,549,393	-				-0.9
2,549,393	-				+0.3
2,549,393	-				+0.3
2,549,393	-				-0.2
2,549,393	-				-0.3
2,549,401	-				+0.2
2,549,408	-				+0.4
2,549,433	-				+0.3
2,549,510	-				-0.1
2,549,673	-		GFF5542	0.28	+1.9
2,549,703	+		GFF5542	0.34	-0.3
2,549,703	+		GFF5542	0.34	+0.8
2,549,704	-		GFF5542	0.34	-0.2
2,549,704	-		GFF5542	0.34	+0.9
2,549,704	-		GFF5542	0.34	-1.4
2,549,704	-		GFF5542	0.34	-0.1
2,549,708	-		GFF5542	0.35	-0.1
2,549,708	-		GFF5542	0.35	-1.7
2,549,895	-		GFF5542	0.68	+1.8
2,549,895	-		GFF5542	0.68	-0.1
2,549,931	+		GFF5542	0.74	+0.1
2,549,932	-		GFF5542	0.74	+0.3
2,549,932	-		GFF5542	0.74	+0.2
2,549,950	+		GFF5542	0.77	+0.0
2,549,951	-		GFF5542	0.78	+0.9
2,550,032	+				-1.1
2,550,032	+				+0.4
2,550,074	+				+1.1
2,550,075	-				-0.3
2,550,075	-				+0.6
2,550,122	+				-0.2
2,550,123	-				-0.1
2,550,146	+				-0.1
2,550,146	+				+0.1
2,550,254	+		GFF5543	0.23	-0.6
2,550,255	-		GFF5543	0.23	-0.9
2,550,334	-		GFF5543	0.36	+0.5
2,550,396	+		GFF5543	0.45	-0.7
2,550,397	-		GFF5543	0.46	+0.1
2,550,397	-		GFF5543	0.46	+0.1
2,550,397	-		GFF5543	0.46	-0.0
2,550,459	-		GFF5543	0.55	-0.1
2,550,494	+		GFF5543	0.61	-0.8
2,550,495	-		GFF5543	0.61	+2.7
2,550,495	-		GFF5543	0.61	-0.3
2,550,617	+		GFF5543	0.80	-0.5
2,550,617	+		GFF5543	0.80	-0.5
2,550,617	+		GFF5543	0.80	+0.3
2,550,617	+		GFF5543	0.80	-0.6
2,550,618	-		GFF5543	0.80	+0.9
2,550,618	-		GFF5543	0.80	+0.6
2,550,618	-		GFF5543	0.80	+0.2
2,550,618	-		GFF5543	0.80	+0.2
2,550,618	-		GFF5543	0.80	+0.1
2,550,618	-		GFF5543	0.80	+0.5
2,550,740	+				+0.9
2,550,741	-				-0.8
2,550,827	+				-0.7
2,550,830	+				+0.5
2,550,830	+				+0.4
2,550,830	+				-0.0
2,550,887	+				+0.3
2,550,888	-				+0.4
2,550,938	+		GFF5544	0.15	+0.5
2,550,939	-		GFF5544	0.15	-0.9
2,550,953	+		GFF5544	0.17	+0.1
2,550,953	+		GFF5544	0.17	-0.2
2,550,953	+		GFF5544	0.17	+0.3
2,550,953	+		GFF5544	0.17	+0.1
2,550,953	+		GFF5544	0.17	+0.8
2,550,954	-		GFF5544	0.17	-0.1
2,550,956	+		GFF5544	0.18	-0.1
2,550,956	+		GFF5544	0.18	-0.3
2,550,956	+		GFF5544	0.18	-0.1
2,550,957	-		GFF5544	0.18	-0.7