Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5517

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,518,576	+		GFF5516	0.24	-0.1
2,518,576	+		GFF5516	0.24	-0.5
2,518,576	+		GFF5516	0.24	+1.4
2,518,577	-		GFF5516	0.24	-0.1
2,518,577	-		GFF5516	0.24	+0.9
2,518,577	-		GFF5516	0.24	-0.2
2,518,597	+		GFF5516	0.26	-0.3
2,518,610	-		GFF5516	0.27	+0.1
2,518,610	-		GFF5516	0.27	+0.1
2,518,651	+		GFF5516	0.32	-0.5
2,518,651	+		GFF5516	0.32	-0.0
2,518,702	+		GFF5516	0.37	+0.7
2,518,702	+		GFF5516	0.37	-0.1
2,518,702	+		GFF5516	0.37	+0.7
2,518,702	+		GFF5516	0.37	-0.7
2,519,008	+		GFF5516	0.68	+0.0
2,519,008	+		GFF5516	0.68	-0.5
2,519,008	+		GFF5516	0.68	-0.5
2,519,008	+		GFF5516	0.68	-0.2
2,519,009	-		GFF5516	0.68	+0.9
2,519,009	-		GFF5516	0.68	-0.2
2,519,504	+				+0.6
2,519,633	+		GFF5517	0.12	+1.7
2,519,634	-		GFF5517	0.13	-0.0
2,519,634	-		GFF5517	0.13	+0.5
2,519,634	-		GFF5517	0.13	+0.9
2,519,888	+		GFF5517	0.27	+0.4
2,519,889	-		GFF5517	0.27	+0.4
2,519,889	-		GFF5517	0.27	-0.7
2,519,889	-		GFF5517	0.27	-0.1
2,519,889	-		GFF5517	0.27	-0.0
2,519,889	-		GFF5517	0.27	-0.6
2,519,889	-		GFF5517	0.27	-0.1
2,519,916	-		GFF5517	0.28	-0.7
2,519,918	+		GFF5517	0.28	+1.1
2,519,919	-		GFF5517	0.28	-0.1
2,520,008	+		GFF5517	0.33	-0.3
2,520,038	+		GFF5517	0.35	+0.1
2,520,038	+		GFF5517	0.35	+0.1
2,520,038	+		GFF5517	0.35	+0.2
2,520,039	-		GFF5517	0.35	+0.0
2,520,039	-		GFF5517	0.35	-0.2
2,520,096	-		GFF5517	0.38	-1.1
2,520,248	+		GFF5517	0.47	+0.4
2,520,338	+		GFF5517	0.52	+0.5
2,520,338	+		GFF5517	0.52	+0.6
2,520,338	+		GFF5517	0.52	-0.0
2,520,338	+		GFF5517	0.52	-0.3
2,520,338	+		GFF5517	0.52	+0.6
2,520,339	-		GFF5517	0.52	-2.1
2,520,339	-		GFF5517	0.52	-0.7
2,520,339	-		GFF5517	0.52	-0.1
2,520,339	-		GFF5517	0.52	+0.2
2,520,339	-		GFF5517	0.52	+0.2
2,520,339	-		GFF5517	0.52	+0.1
2,520,371	+		GFF5517	0.54	-0.7
2,520,398	+		GFF5517	0.55	+0.9
2,520,451	+		GFF5517	0.58	+0.3
2,520,452	-		GFF5517	0.58	-0.5
2,520,609	-		GFF5517	0.67	+0.2
2,520,609	-		GFF5517	0.67	-0.8
2,520,609	-		GFF5517	0.67	-0.5
2,520,641	+		GFF5517	0.69	-0.3
2,520,641	+		GFF5517	0.69	-0.1
2,520,641	+		GFF5517	0.69	-1.2
2,520,641	+		GFF5517	0.69	+0.6
2,520,641	+		GFF5517	0.69	+0.4
2,520,642	-		GFF5517	0.69	+0.1
2,520,642	-		GFF5517	0.69	-1.5
2,520,642	-		GFF5517	0.69	+0.2
2,520,642	-		GFF5517	0.69	+0.9
2,520,642	-		GFF5517	0.69	+0.6
2,520,758	+		GFF5517	0.75	+0.5
2,520,758	+		GFF5517	0.75	+0.9
2,520,759	-		GFF5517	0.75	+0.1
2,520,759	-		GFF5517	0.75	+0.4
2,520,951	-		GFF5517	0.86	-0.1
2,521,193	+				-0.4
2,521,193	+				-0.8
2,521,194	-				-1.4
2,521,194	-				+0.9
2,521,194	-				+1.1
2,521,194	-				+1.3