Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF549 and GFF550 are separated by 311 nucleotides GFF550 and GFF551 are separated by 49 nucleotides
GFF549 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 216,832 to 217,926
GFF549
GFF550 - C4-type zinc finger protein, DksA/TraR family, at 218,238 to 219,362
GFF550
GFF551 - FIG00931886: hypothetical protein, at 219,412 to 221,289
GFF551
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 217.652 kb on + strand, within GFF549 at 217.717 kb on + strand, within GFF549 at 217.717 kb on + strand, within GFF549 at 217.717 kb on + strand, within GFF549 at 217.718 kb on - strand, within GFF549 at 217.718 kb on - strand, within GFF549 at 217.738 kb on + strand, within GFF549 at 217.738 kb on + strand, within GFF549 at 217.738 kb on + strand, within GFF549 at 217.739 kb on - strand, within GFF549 at 217.739 kb on - strand, within GFF549 at 217.739 kb on - strand, within GFF549 at 218.053 kb on - strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.134 kb on + strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.135 kb on - strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.136 kb on + strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.137 kb on - strand at 218.861 kb on + strand, within GFF550 at 218.862 kb on - strand, within GFF550 at 218.997 kb on + strand, within GFF550 at 218.998 kb on - strand, within GFF550 at 219.237 kb on + strand, within GFF550 at 219.237 kb on + strand, within GFF550 at 219.526 kb on + strand at 219.527 kb on - strand at 219.907 kb on + strand, within GFF551 at 219.908 kb on - strand, within GFF551 at 219.993 kb on + strand, within GFF551 at 219.994 kb on - strand, within GFF551 at 220.172 kb on + strand, within GFF551 at 220.172 kb on - strand, within GFF551 at 220.172 kb on - strand, within GFF551 at 220.339 kb on + strand, within GFF551 at 220.340 kb on - strand, within GFF551
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 217,652 + GFF549 0.75 +0.2 217,717 + GFF549 0.81 -0.0 217,717 + GFF549 0.81 +1.0 217,717 + GFF549 0.81 +0.1 217,718 - GFF549 0.81 +0.4 217,718 - GFF549 0.81 -0.0 217,738 + GFF549 0.83 -1.0 217,738 + GFF549 0.83 -0.5 217,738 + GFF549 0.83 +0.5 217,739 - GFF549 0.83 +0.1 217,739 - GFF549 0.83 -0.4 217,739 - GFF549 0.83 -0.3 218,053 - +1.2 218,134 + +0.2 218,134 + +0.3 218,134 + -0.4 218,134 + -0.0 218,134 + +1.1 218,134 + +0.4 218,134 + +0.3 218,134 + -0.0 218,134 + -0.6 218,134 + -0.2 218,134 + +0.5 218,134 + -0.0 218,135 - -0.5 218,135 - -0.4 218,135 - -1.3 218,135 - -0.9 218,135 - -0.1 218,136 + -0.7 218,136 + -0.3 218,136 + -2.2 218,136 + -1.0 218,136 + +0.5 218,137 - -2.2 218,137 - -2.4 218,137 - -2.2 218,137 - -1.1 218,137 - -2.5 218,861 + GFF550 0.55 -1.8 218,862 - GFF550 0.55 -2.1 218,997 + GFF550 0.67 -0.6 218,998 - GFF550 0.68 -1.5 219,237 + GFF550 0.89 -1.0 219,237 + GFF550 0.89 -3.0 219,526 + -0.0 219,527 - -2.0 219,907 + GFF551 0.26 +0.5 219,908 - GFF551 0.26 +1.5 219,993 + GFF551 0.31 +0.5 219,994 - GFF551 0.31 +0.1 220,172 + GFF551 0.40 +0.7 220,172 - GFF551 0.40 +0.2 220,172 - GFF551 0.40 +0.6 220,339 + GFF551 0.49 -1.9 220,340 - GFF551 0.49 -0.0
Or see this region's nucleotide sequence