Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF545 and GFF546 are separated by 24 nucleotides GFF546 and GFF547 are separated by 16 nucleotides GFF547 and GFF548 are separated by 94 nucleotides GFF548 and GFF549 are separated by 245 nucleotides
GFF545 - Diaminopimelate epimerase (EC 5.1.1.7), at 213,414 to 214,289
GFF545
GFF546 - Protein of unknown function DUF484, at 214,314 to 214,997
GFF546
GFF547 - Tyrosine recombinase XerC, at 215,014 to 216,045
GFF547
GFF548 - Blr3520 protein homolog, hypothetical protein, at 216,140 to 216,586
GFF548
GFF549 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 216,832 to 217,926
GFF549
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.362 kb on + strand at 214.362 kb on + strand at 214.363 kb on - strand at 214.363 kb on - strand at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 215.086 kb on + strand at 215.140 kb on + strand, within GFF547 at 215.140 kb on + strand, within GFF547 at 215.141 kb on - strand, within GFF547 at 215.302 kb on + strand, within GFF547 at 215.303 kb on - strand, within GFF547 at 215.488 kb on + strand, within GFF547 at 215.906 kb on - strand, within GFF547 at 215.941 kb on + strand, within GFF547 at 215.942 kb on - strand at 215.942 kb on - strand at 216.084 kb on + strand at 216.084 kb on + strand at 216.084 kb on + strand at 216.084 kb on + strand at 216.085 kb on - strand at 216.248 kb on + strand, within GFF548 at 216.248 kb on + strand, within GFF548 at 216.248 kb on + strand, within GFF548 at 216.248 kb on + strand, within GFF548 at 216.249 kb on - strand, within GFF548 at 216.572 kb on + strand at 216.573 kb on - strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.781 kb on + strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.782 kb on - strand at 216.997 kb on + strand, within GFF549
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 214,362 + -1.7 214,362 + -0.0 214,363 - -2.1 214,363 - -1.4 214,695 + GFF546 0.56 -1.4 214,695 + GFF546 0.56 -0.6 214,695 + GFF546 0.56 -0.7 214,695 + GFF546 0.56 -0.3 214,695 + GFF546 0.56 +1.0 214,696 - GFF546 0.56 -0.0 214,696 - GFF546 0.56 -0.4 214,696 - GFF546 0.56 -1.0 214,696 - GFF546 0.56 -1.7 215,086 + -0.5 215,140 + GFF547 0.12 -2.7 215,140 + GFF547 0.12 -1.9 215,141 - GFF547 0.12 -1.6 215,302 + GFF547 0.28 -1.6 215,303 - GFF547 0.28 -1.6 215,488 + GFF547 0.46 -1.0 215,906 - GFF547 0.86 -1.5 215,941 + GFF547 0.90 -0.7 215,942 - -1.0 215,942 - -1.4 216,084 + -0.0 216,084 + -0.6 216,084 + +0.8 216,084 + +0.2 216,085 - +0.1 216,248 + GFF548 0.24 +0.7 216,248 + GFF548 0.24 +1.7 216,248 + GFF548 0.24 -0.7 216,248 + GFF548 0.24 -0.0 216,249 - GFF548 0.24 -0.6 216,572 + +0.2 216,573 - +0.8 216,781 + +0.9 216,781 + -0.2 216,781 + +0.0 216,781 + -0.1 216,781 + +0.2 216,781 + +0.6 216,781 + -0.9 216,781 + -0.7 216,781 + +0.4 216,782 - +0.1 216,782 - -0.2 216,782 - +0.1 216,782 - -0.0 216,782 - +2.3 216,782 - +1.2 216,782 - +0.3 216,782 - +1.0 216,782 - -0.1 216,782 - +0.3 216,997 + GFF549 0.15 +2.0
Or see this region's nucleotide sequence