Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5389

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,391,662	+		GFF5388	0.79	+0.3
2,391,672	-		GFF5388	0.80	+1.2
2,391,896	+				+2.0
2,391,970	+				+0.3
2,392,035	+				-1.1
2,392,228	+				+0.0
2,392,229	-				+1.6
2,392,229	-				+0.8
2,392,403	-		GFF5389	0.15	+0.4
2,392,426	+		GFF5389	0.16	-1.4
2,392,516	+		GFF5389	0.20	+0.5
2,392,657	+		GFF5389	0.27	-0.1
2,392,658	-		GFF5389	0.27	-0.5
2,392,864	+		GFF5389	0.36	+1.1
2,392,864	+		GFF5389	0.36	+0.0
2,392,910	-		GFF5389	0.38	+0.1
2,392,954	+		GFF5389	0.40	+0.1
2,393,114	-		GFF5389	0.47	+0.8
2,393,345	-		GFF5389	0.57	+0.2
2,393,560	+		GFF5389	0.67	+0.4
2,393,572	+		GFF5389	0.67	+1.1
2,393,573	-		GFF5389	0.67	-0.9
2,393,585	-		GFF5389	0.68	+0.2
2,393,585	-		GFF5389	0.68	+0.1
2,393,585	-		GFF5389	0.68	+1.0
2,393,806	+		GFF5389	0.78	-1.0
2,393,903	-		GFF5389	0.82	-0.4
2,393,903	-		GFF5389	0.82	+1.2
2,394,148	+				+0.3
2,394,148	+				-0.6
2,394,256	+				+1.0
2,394,256	+				+0.4
2,394,257	-				+0.7
2,394,357	+				+1.8
2,394,358	-				+1.1
2,394,358	-				+0.7
2,394,527	-				+0.6
2,394,571	+		GFF5390	0.11	+0.8
2,394,571	+		GFF5390	0.11	-0.9
2,394,625	+		GFF5390	0.15	+1.2
2,394,625	+		GFF5390	0.15	+0.5
2,394,626	-		GFF5390	0.15	+1.2
2,394,908	-		GFF5390	0.35	+0.6
2,394,956	-		GFF5390	0.38	+1.4
2,395,111	+		GFF5390	0.50	+0.7