Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF519 and GFF520 are separated by 113 nucleotides GFF520 and GFF521 are separated by 1 nucleotides GFF521 and GFF522 are separated by 24 nucleotides
GFF519 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 187,121 to 188,020
GFF519
GFF520 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 188,134 to 188,889
GFF520
GFF521 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 188,891 to 189,562
GFF521
GFF522 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 189,587 to 190,324
GFF522
Position (kb) 188
189 Strain fitness (log2 ratio) -1
0
1
2 at 187.260 kb on - strand, within GFF519 at 187.260 kb on - strand, within GFF519 at 187.281 kb on - strand, within GFF519 at 187.364 kb on + strand, within GFF519 at 187.364 kb on + strand, within GFF519 at 187.487 kb on + strand, within GFF519 at 187.488 kb on - strand, within GFF519 at 187.643 kb on + strand, within GFF519 at 187.761 kb on - strand, within GFF519 at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.018 kb on + strand at 188.018 kb on + strand at 188.133 kb on + strand at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.313 kb on + strand, within GFF520 at 188.561 kb on - strand, within GFF520 at 188.597 kb on - strand, within GFF520 at 188.599 kb on + strand, within GFF520 at 188.600 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.789 kb on - strand, within GFF520 at 188.849 kb on + strand at 188.919 kb on - strand at 189.075 kb on - strand, within GFF521 at 189.075 kb on - strand, within GFF521 at 189.290 kb on + strand, within GFF521 at 189.291 kb on - strand, within GFF521 at 189.395 kb on + strand, within GFF521 at 189.506 kb on + strand at 189.506 kb on + strand at 189.506 kb on + strand at 189.507 kb on - strand at 189.507 kb on - strand at 189.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 187,260 - GFF519 0.15 +1.5 187,260 - GFF519 0.15 +1.6 187,281 - GFF519 0.18 +0.5 187,364 + GFF519 0.27 +0.5 187,364 + GFF519 0.27 -0.8 187,487 + GFF519 0.41 +1.3 187,488 - GFF519 0.41 +1.4 187,643 + GFF519 0.58 +1.2 187,761 - GFF519 0.71 -0.5 188,007 - +1.3 188,007 - +1.5 188,007 - +1.1 188,018 + +0.9 188,018 + +0.6 188,133 + +0.5 188,222 - GFF520 0.12 +0.4 188,222 - GFF520 0.12 +0.7 188,222 - GFF520 0.12 +0.9 188,222 - GFF520 0.12 -0.5 188,222 - GFF520 0.12 +0.8 188,313 + GFF520 0.24 +0.8 188,561 - GFF520 0.56 +2.4 188,597 - GFF520 0.61 +0.7 188,599 + GFF520 0.62 +0.1 188,600 - GFF520 0.62 +0.5 188,768 - GFF520 0.84 +0.4 188,768 - GFF520 0.84 -0.2 188,789 - GFF520 0.87 +0.9 188,849 + +1.3 188,919 - +0.8 189,075 - GFF521 0.27 -0.2 189,075 - GFF521 0.27 -0.1 189,290 + GFF521 0.59 +0.5 189,291 - GFF521 0.60 -1.1 189,395 + GFF521 0.75 +1.1 189,506 + +0.7 189,506 + +1.0 189,506 + +0.5 189,507 - +1.2 189,507 - +0.6 189,555 + +1.2
Or see this region's nucleotide sequence