Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5165

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,179,088	+		GFF5163	0.73	-1.0
2,179,088	+		GFF5163	0.73	-0.2
2,179,290	+				+0.3
2,179,290	+				-0.4
2,179,290	+				-0.0
2,179,291	-				+0.2
2,179,291	-				-0.4
2,179,291	-				+0.1
2,179,291	-				-0.0
2,179,885	+		GFF5164	0.76	+0.4
2,179,885	+		GFF5164	0.76	-0.1
2,179,886	-		GFF5164	0.76	-0.2
2,179,958	-		GFF5164	0.86	+0.9
2,179,958	-		GFF5164	0.86	+0.4
2,179,973	-		GFF5164	0.88	-0.1
2,179,973	-		GFF5164	0.88	+0.2
2,180,020	+				+0.6
2,180,020	+				+0.5
2,180,021	-				-0.3
2,180,021	-				-0.1
2,180,468	+		GFF5165	0.12	-0.0
2,180,469	-		GFF5165	0.13	-0.8
2,180,469	-		GFF5165	0.13	-0.2
2,180,469	-		GFF5165	0.13	-0.5
2,180,469	-		GFF5165	0.13	-0.0
2,180,558	+		GFF5165	0.15	-0.3
2,180,558	+		GFF5165	0.15	+0.2
2,180,600	+		GFF5165	0.17	+0.3
2,180,601	-		GFF5165	0.17	+0.0
2,180,601	-		GFF5165	0.17	+0.6
2,180,696	+		GFF5165	0.19	-0.0
2,180,697	-		GFF5165	0.19	+0.7
2,180,780	+		GFF5165	0.22	-0.1
2,180,780	+		GFF5165	0.22	+0.3
2,180,780	+		GFF5165	0.22	-0.4
2,180,781	-		GFF5165	0.22	-0.2
2,180,781	-		GFF5165	0.22	+0.7
2,180,897	+		GFF5165	0.26	-1.0
2,180,945	+		GFF5165	0.27	+0.4
2,180,945	+		GFF5165	0.27	+0.3
2,181,317	+		GFF5165	0.38	+0.9
2,181,317	+		GFF5165	0.38	-0.0
2,181,575	+		GFF5165	0.46	+0.2
2,181,761	+		GFF5165	0.52	+0.7
2,181,761	+		GFF5165	0.52	-0.2
2,181,761	+		GFF5165	0.52	-0.4
2,181,761	+		GFF5165	0.52	-0.1
2,181,762	-		GFF5165	0.52	+0.1
2,181,762	-		GFF5165	0.52	+0.2
2,181,827	+		GFF5165	0.54	+2.1
2,181,827	+		GFF5165	0.54	+0.1
2,181,828	-		GFF5165	0.54	-0.0
2,181,828	-		GFF5165	0.54	+0.1
2,181,828	-		GFF5165	0.54	+0.1
2,181,828	-		GFF5165	0.54	+1.0
2,181,845	+		GFF5165	0.54	+0.5
2,181,846	-		GFF5165	0.54	+0.4
2,181,846	-		GFF5165	0.54	+0.1
2,181,863	+		GFF5165	0.55	-0.3
2,181,863	+		GFF5165	0.55	+0.2
2,181,864	-		GFF5165	0.55	+0.3
2,181,878	+		GFF5165	0.55	+0.6
2,181,878	+		GFF5165	0.55	+0.0
2,181,879	-		GFF5165	0.55	+0.4
2,181,890	+		GFF5165	0.56	-0.1
2,181,891	-		GFF5165	0.56	-0.2
2,182,014	-		GFF5165	0.60	-0.1
2,182,014	-		GFF5165	0.60	+0.1
2,182,401	-		GFF5165	0.71	-0.4
2,182,691	+		GFF5165	0.80	+0.4
2,182,691	+		GFF5165	0.80	+1.0
2,182,692	-		GFF5165	0.80	+0.8
2,182,692	-		GFF5165	0.80	-0.3
2,182,715	+		GFF5165	0.81	+0.0
2,182,716	-		GFF5165	0.81	-0.4
2,182,716	-		GFF5165	0.81	-1.3
2,182,716	-		GFF5165	0.81	+1.0
2,182,853	+		GFF5165	0.85	+0.4
2,182,853	+		GFF5165	0.85	-0.1
2,182,854	-		GFF5165	0.85	-0.4
2,182,919	+		GFF5165	0.87	+0.1
2,182,919	+		GFF5165	0.87	+0.5
2,182,919	+		GFF5165	0.87	+0.5
2,182,919	+		GFF5165	0.87	-0.0
2,182,920	-		GFF5165	0.87	-0.1
2,182,920	-		GFF5165	0.87	+0.1
2,183,192	+				+0.4
2,183,193	-				+0.3
2,183,193	-				+0.1
2,183,193	-				+0.5
2,183,428	+		GFF5166	0.21	-0.3
2,183,428	+		GFF5166	0.21	+0.9
2,183,437	+		GFF5166	0.23	+1.6
2,183,438	-		GFF5166	0.23	-0.4
2,183,438	-		GFF5166	0.23	+0.2
2,183,438	-		GFF5166	0.23	-0.3
2,183,528	-		GFF5166	0.45	-0.1
2,183,581	+		GFF5166	0.57	+0.3