Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4920

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,933,900	+		GFF4918	0.87	-0.2
1,934,699	+				-0.2
1,934,699	+				-0.1
1,934,753	+				+0.5
1,934,753	+				+0.7
1,934,754	-				-0.6
1,934,754	-				-0.5
1,934,754	-				+0.6
1,934,754	-				+0.2
1,934,882	+		GFF4920	0.19	+0.0
1,934,883	-		GFF4920	0.19	-0.3
1,935,075	-		GFF4920	0.40	+0.5
1,935,131	+		GFF4920	0.46	-0.4
1,935,131	+		GFF4920	0.46	-0.6
1,935,132	-		GFF4920	0.46	+1.6
1,935,132	-		GFF4920	0.46	-0.0
1,935,287	+		GFF4920	0.62	-0.1
1,935,287	+		GFF4920	0.62	-0.8
1,935,287	+		GFF4920	0.62	-0.3
1,935,287	+		GFF4920	0.62	-0.7
1,935,287	+		GFF4920	0.62	-0.8
1,935,288	-		GFF4920	0.62	-0.8
1,935,288	-		GFF4920	0.62	-1.1
1,935,288	-		GFF4920	0.62	+0.8
1,935,461	+		GFF4920	0.81	+0.2
1,935,461	+		GFF4920	0.81	-0.5
1,935,461	+		GFF4920	0.81	+0.4
1,935,462	-		GFF4920	0.81	+0.3
1,935,462	-		GFF4920	0.81	-1.0
1,935,462	-		GFF4920	0.81	-0.6
1,936,057	-		GFF4921	0.18	+0.9
1,936,098	+		GFF4921	0.20	-0.1
1,936,098	+		GFF4921	0.20	+0.4
1,936,098	+		GFF4921	0.20	+0.3
1,936,099	-		GFF4921	0.20	+0.3
1,936,099	-		GFF4921	0.20	+0.9
1,936,099	-		GFF4921	0.20	+0.4
1,936,185	+		GFF4921	0.24	-0.5
1,936,185	+		GFF4921	0.24	+0.5
1,936,186	-		GFF4921	0.24	+0.5
1,936,186	-		GFF4921	0.24	+1.9
1,936,186	-		GFF4921	0.24	-1.4
1,936,186	-		GFF4921	0.24	+0.9
1,936,186	-		GFF4921	0.24	+0.4
1,936,398	+		GFF4921	0.34	+0.6
1,936,399	-		GFF4921	0.34	+1.5
1,936,399	-		GFF4921	0.34	+0.2
1,936,482	+		GFF4921	0.38	+0.8
1,936,483	-		GFF4921	0.38	+0.7
1,936,483	-		GFF4921	0.38	+0.2
1,936,483	-		GFF4921	0.38	+1.7
1,936,483	-		GFF4921	0.38	+0.5
1,936,527	+		GFF4921	0.40	+0.9