Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4744

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,714,313	+		GFF4743	0.72	+0.5
1,714,524	-		GFF4743	0.78	+0.5
1,714,532	+		GFF4743	0.79	-0.2
1,714,533	-		GFF4743	0.79	-0.7
1,714,958	+				-0.0
1,714,958	+				+0.6
1,714,958	+				-0.2
1,714,959	-				+0.3
1,714,959	-				-0.2
1,714,959	-				+0.0
1,715,680	+				+0.5
1,715,680	+				-0.0
1,715,680	+				-0.3
1,715,680	+				+1.0
1,715,680	+				-0.0
1,715,681	-				+0.7
1,715,681	-				+0.4
1,715,681	-				-0.0
1,715,681	-				-0.0
1,715,681	-				+0.6
1,715,681	-				+0.8
1,715,749	+		GFF4744	0.11	+1.0
1,715,900	-		GFF4744	0.14	+1.3
1,716,392	-		GFF4744	0.25	+0.2
1,716,392	-		GFF4744	0.25	+0.1
1,716,392	-		GFF4744	0.25	-0.6
1,716,481	+		GFF4744	0.27	+0.3
1,716,925	+		GFF4744	0.37	-0.6
1,716,926	-		GFF4744	0.37	-0.2
1,717,237	+		GFF4744	0.43	-0.2
1,717,238	-		GFF4744	0.43	-0.0
1,717,238	-		GFF4744	0.43	+2.3
1,717,537	+		GFF4744	0.50	+0.1
1,717,537	+		GFF4744	0.50	+0.5
1,717,538	-		GFF4744	0.50	+0.4
1,717,540	+		GFF4744	0.50	-0.1
1,717,597	+		GFF4744	0.51	-0.0
1,717,598	-		GFF4744	0.51	+0.9
1,717,598	-		GFF4744	0.51	+0.7
1,717,598	-		GFF4744	0.51	-0.2
1,717,973	-		GFF4744	0.59	+0.5
1,717,973	-		GFF4744	0.59	+1.0
1,718,185	+		GFF4744	0.64	+1.5
1,719,202	+		GFF4744	0.86	-0.0
1,719,203	-		GFF4744	0.86	+1.5
1,719,203	-		GFF4744	0.86	+0.1
1,719,463	+				-0.5
1,719,463	+				+0.6
1,719,463	+				+0.8
1,719,464	-				+0.8
1,719,668	-				+0.3
1,720,274	+		GFF4745	0.12	+0.1
1,720,274	+		GFF4745	0.12	-0.3
1,720,275	-		GFF4745	0.12	+0.1
1,720,349	+		GFF4745	0.14	+0.1
1,720,350	-		GFF4745	0.14	+1.0
1,720,548	-		GFF4745	0.20	+0.8
1,720,548	-		GFF4745	0.20	+0.1
1,720,706	+		GFF4745	0.25	-0.6
1,720,707	-		GFF4745	0.25	+0.5
1,720,805	+		GFF4745	0.28	+0.4
1,720,806	-		GFF4745	0.28	+0.5